Strain Fitness in Pseudomonas simiae WCS417 around PS417_09060

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,970,914	-				-0.8
1,970,914	-				+1.2
1,970,965	+				-1.6
1,970,969	+				+0.2
1,970,969	+				-0.4
1,971,006	+				-1.6
1,971,868	+				+0.7
1,972,107	+		PS417_09060	0.22	+0.1
1,972,107	+		PS417_09060	0.22	+0.4
1,972,108	-		PS417_09060	0.22	-2.3
1,972,236	+		PS417_09060	0.35	-1.3
1,972,237	-		PS417_09060	0.35	-0.4
1,972,488	+		PS417_09060	0.60	-1.0
1,972,560	+		PS417_09060	0.67	-1.1
1,972,561	-		PS417_09060	0.67	-0.8
1,972,618	-		PS417_09060	0.73	-2.2
1,972,618	-		PS417_09060	0.73	+0.1
1,972,711	-		PS417_09060	0.82	-0.2
1,972,711	-		PS417_09060	0.82	-1.0
1,972,711	-		PS417_09060	0.82	-0.1
1,972,711	-		PS417_09060	0.82	+1.8
1,972,761	+		PS417_09060	0.87	+0.7
1,972,761	+		PS417_09060	0.87	-0.3
1,972,819	-				-1.2
1,972,930	-				-1.7
1,972,997	-				+0.4
1,973,122	+				-0.4
1,973,123	-				-0.3
1,973,123	-				-0.1
1,973,123	-				-0.4
1,973,366	+				+1.6
1,973,367	-		PS417_09065	0.32	-0.2
1,973,587	+		PS417_09065	0.61	-0.8
1,973,587	+		PS417_09065	0.61	+0.9
1,973,587	+		PS417_09065	0.61	-2.4
1,973,587	+		PS417_09065	0.61	-1.2
1,973,588	-		PS417_09065	0.61	-0.1
1,973,701	+		PS417_09065	0.76	-1.0
1,973,701	+				+1.9
1,973,882	+				-0.6
1,973,882	+				-1.2