Strain Fitness in Pseudomonas simiae WCS417 around PS417_08950

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,947,744	+		PS417_08945	0.56	+1.6
1,947,744	+		PS417_08945	0.56	-1.9
1,947,744	+		PS417_08945	0.56	+0.6
1,947,744	+		PS417_08945	0.56	+0.0
1,947,958	+		PS417_08945	0.67	+5.5
1,947,994	+		PS417_08945	0.69	-0.6
1,947,995	-		PS417_08945	0.69	-0.5
1,947,995	-		PS417_08945	0.69	+2.8
1,947,995	-		PS417_08945	0.69	-0.9
1,947,995	-		PS417_08945	0.69	-0.6
1,947,997	+		PS417_08945	0.69	-0.1
1,948,093	-		PS417_08945	0.74	+0.7
1,948,114	+		PS417_08945	0.75	+0.9
1,948,114	+		PS417_08945	0.75	-1.3
1,948,115	-		PS417_08945	0.75	-0.5
1,948,546	+				-0.1
1,948,547	-				-0.0
1,948,547	-				-1.7
1,948,669	-				+2.8
1,948,688	-				-0.8
1,948,709	+				-1.1
1,948,709	+				+0.5
1,948,709	+				-0.9
1,948,709	+				+2.4
1,948,744	+				+1.0
1,948,874	+		PS417_08950	0.25	-0.6
1,948,874	+		PS417_08950	0.25	+0.5
1,948,875	-		PS417_08950	0.25	+0.5
1,948,875	-		PS417_08950	0.25	+2.6
1,948,878	-		PS417_08950	0.25	-0.5
1,948,878	-		PS417_08950	0.25	+1.7
1,949,350	+				-0.1
1,949,351	-				-0.4
1,949,351	-				-1.1
1,949,391	+				+0.2
1,949,391	+				-0.3
1,949,391	+				+0.1
1,949,427	+				+0.5
1,949,492	-				-0.3
1,949,805	+		PS417_08955	0.32	+3.0
1,949,805	+		PS417_08955	0.32	-0.5
1,949,805	+		PS417_08955	0.32	-0.7
1,949,805	+		PS417_08955	0.32	+1.1
1,949,806	-		PS417_08955	0.32	+0.6
1,949,864	+		PS417_08955	0.38	-2.4
1,949,865	-		PS417_08955	0.39	-1.0
1,949,874	+		PS417_08955	0.40	-0.9
1,949,875	-		PS417_08955	0.40	+0.2
1,949,875	-		PS417_08955	0.40	+0.1
1,949,994	+		PS417_08955	0.53	-0.5
1,950,088	+		PS417_08955	0.64	-0.4
1,950,089	-		PS417_08955	0.64	+1.3
1,950,089	-		PS417_08955	0.64	+0.5
1,950,201	+		PS417_08955	0.77	-0.1
1,950,201	+				-0.1
1,950,202	-		PS417_08955	0.77	-0.7
1,950,202	-		PS417_08955	0.77	-0.1
1,950,202	-		PS417_08955	0.77	+1.5
1,950,224	-		PS417_08955	0.80	+0.1
1,950,281	-		PS417_08955	0.87	-2.0
1,950,281	-		PS417_08955	0.87	-2.2
1,950,281	-		PS417_08955	0.87	-0.2