Strain Fitness in Pseudomonas simiae WCS417 around PS417_07900

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,730,632	+		PS417_07895	0.36	-0.4
1,730,633	-		PS417_07895	0.36	-1.2
1,730,779	+		PS417_07895	0.87	-0.0
1,730,779	+		PS417_07895	0.87	-0.3
1,730,780	-		PS417_07895	0.88	+1.2
1,730,814	-				+0.2
1,730,830	+				-1.1
1,730,830	+				-0.3
1,730,830	+				-1.1
1,730,830	+				+0.4
1,730,831	-				-1.3
1,730,831	-				-1.7
1,731,132	+				-0.8
1,731,133	-				+0.7
1,731,147	+				+1.1
1,731,165	-				-0.5
1,731,240	+				-0.5
1,731,240	+				-1.1
1,731,280	+				+0.8
1,731,421	+				-0.6
1,731,422	-				+0.3
1,731,431	+				-0.2
1,731,432	-				+0.7
1,731,484	+				+0.5
1,731,485	-				-1.0
1,731,509	-				-1.0
1,731,587	+		PS417_07900	0.13	-0.1
1,731,660	-		PS417_07900	0.23	-0.1
1,731,660	-		PS417_07900	0.23	+1.0
1,731,691	-		PS417_07900	0.27	+0.0
1,731,694	+		PS417_07900	0.27	-0.5
1,731,903	-		PS417_07900	0.55	+0.7
1,731,903	-		PS417_07900	0.55	-0.3
1,731,903	-		PS417_07900	0.55	-0.5
1,731,903	-		PS417_07900	0.55	-0.2
1,731,903	-		PS417_07900	0.55	-0.7
1,731,904	+		PS417_07900	0.55	-0.5
1,731,978	-		PS417_07900	0.65	-0.8
1,731,995	-		PS417_07900	0.68	-0.2
1,732,091	+		PS417_07900	0.80	-0.7
1,732,091	+		PS417_07900	0.80	-1.0
1,732,091	+		PS417_07900	0.80	-0.6
1,732,092	-		PS417_07900	0.81	+0.2
1,732,092	-		PS417_07900	0.81	+0.0
1,732,135	-		PS417_07900	0.86	-0.8
1,732,184	-				-1.3
1,732,184	-				-0.7
1,732,230	-				+0.2
1,732,287	+				-0.3
1,732,288	-				-0.1
1,732,309	-				+0.1
1,732,343	+				+0.1
1,732,359	-				+1.2
1,732,420	-		PS417_07905	0.12	-1.2
1,732,508	+		PS417_07905	0.30	-0.4
1,732,555	+		PS417_07905	0.39	-0.6
1,732,618	+		PS417_07905	0.52	+1.1
1,732,618	+		PS417_07905	0.52	+1.5
1,732,618	+		PS417_07905	0.52	-0.1
1,732,618	+		PS417_07905	0.52	+0.3
1,732,618	+		PS417_07905	0.52	-1.2
1,732,619	-		PS417_07905	0.52	-0.5
1,732,619	-		PS417_07905	0.52	-1.7
1,732,622	+		PS417_07905	0.53	-0.6
1,732,622	+		PS417_07905	0.53	-2.5
1,732,690	-		PS417_07905	0.66	+0.9
1,732,690	-		PS417_07905	0.66	-0.8
1,732,747	+		PS417_07905	0.78	-1.8
1,732,747	+		PS417_07905	0.78	-1.7
1,732,747	+		PS417_07905	0.78	-0.1
1,732,748	-		PS417_07905	0.78	-1.3
1,732,748	-		PS417_07905	0.78	-0.5
1,732,748	-		PS417_07905	0.78	+1.1
1,732,808	+				-0.3
1,732,809	-				-0.1
1,732,915	-				+0.4
1,733,165	+				-2.0
1,733,165	+				-0.4
1,733,166	-				-1.3