Strain Fitness in Pseudomonas simiae WCS417 around PS417_07500

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,647,178	+		PS417_07495	0.25	+0.4
1,647,179	-		PS417_07495	0.25	-0.1
1,647,284	+		PS417_07495	0.38	+1.5
1,647,285	-		PS417_07495	0.38	-0.2
1,647,343	-		PS417_07495	0.45	+0.5
1,647,393	-		PS417_07495	0.51	+0.1
1,647,398	+		PS417_07495	0.51	-1.4
1,647,398	+		PS417_07495	0.51	-0.1
1,647,399	-		PS417_07495	0.51	-0.7
1,647,399	-		PS417_07495	0.51	+0.8
1,647,530	+		PS417_07495	0.67	-0.2
1,647,531	-		PS417_07495	0.67	+0.5
1,647,603	-		PS417_07495	0.75	+1.1
1,647,785	+				-0.5
1,647,785	+				-1.8
1,647,785	+				+0.7
1,647,785	+				-0.4
1,647,785	+				-1.1
1,647,786	-				-0.0
1,647,786	-				+0.7
1,647,786	-				+1.0
1,647,843	+				+0.9
1,647,844	-				+1.2
1,647,844	-				+0.2
1,647,844	-				-1.6
1,647,883	-				-1.3
1,647,939	-				+0.3
1,648,168	+		PS417_07500	0.24	-0.5
1,648,168	+		PS417_07500	0.24	-0.2
1,648,169	-		PS417_07500	0.24	-0.7
1,648,169	-		PS417_07500	0.24	-0.7
1,648,169	-		PS417_07500	0.24	-1.7
1,648,463	+		PS417_07500	0.51	-0.8
1,648,464	-		PS417_07500	0.51	+0.4
1,648,611	+		PS417_07500	0.65	-0.1
1,648,671	+		PS417_07500	0.71	-0.5
1,648,889	+				-1.0
1,648,889	+				-1.5
1,648,890	-				-0.5
1,648,890	-				-0.4
1,648,904	+				-0.3
1,649,071	+				+0.3
1,649,102	+				+1.8
1,649,103	-				+0.3
1,649,233	+		PS417_07505	0.12	+0.3
1,649,374	+		PS417_07505	0.27	-0.3
1,649,377	-		PS417_07505	0.27	-0.8
1,649,377	-		PS417_07505	0.27	+1.2
1,649,530	+		PS417_07505	0.43	+1.2
1,649,531	-		PS417_07505	0.43	+0.6
1,649,680	+		PS417_07505	0.58	-1.5
1,649,680	+		PS417_07505	0.58	-0.1
1,649,681	-		PS417_07505	0.58	-1.5
1,649,681	-		PS417_07505	0.58	-0.0
1,649,681	-		PS417_07505	0.58	-1.1
1,649,683	-		PS417_07505	0.58	+0.0
1,649,683	-				-0.8