Strain Fitness in Pseudomonas simiae WCS417 around PS417_00610

Experiment: P. simiae OR Antrim MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00605 and PS417_00610 overlap by 4 nucleotidesPS417_00610 and PS417_00615 overlap by 4 nucleotides PS417_00605: PS417_00605 - peptide transporter, at 121,763 to 125,140 _00605 PS417_00610: PS417_00610 - aminobenzoate oxygenase, at 125,137 to 126,084 _00610 PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839 _00615 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.196 kb on - strand, within PS417_00605at 124.337 kb on + strand, within PS417_00605at 124.337 kb on + strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.338 kb on - strand, within PS417_00605at 124.407 kb on + strand, within PS417_00605at 124.408 kb on - strand, within PS417_00605at 124.408 kb on - strand, within PS417_00605at 124.438 kb on + strand, within PS417_00605at 124.439 kb on - strand, within PS417_00605at 124.446 kb on + strand, within PS417_00605at 124.447 kb on - strand, within PS417_00605at 124.560 kb on + strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.561 kb on - strand, within PS417_00605at 124.581 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.610 kb on - strand, within PS417_00605at 124.659 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 124.768 kb on - strand, within PS417_00605at 125.059 kb on + strandat 125.059 kb on + strandat 125.067 kb on + strandat 125.165 kb on + strandat 125.165 kb on + strandat 125.166 kb on - strandat 125.262 kb on + strand, within PS417_00610at 125.306 kb on - strand, within PS417_00610at 125.444 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.617 kb on + strand, within PS417_00610at 125.618 kb on - strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.695 kb on + strand, within PS417_00610at 125.750 kb on + strand, within PS417_00610at 125.891 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.908 kb on + strand, within PS417_00610at 125.981 kb on + strand, within PS417_00610at 125.982 kb on - strand, within PS417_00610at 126.068 kb on + strandat 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.281 kb on + strand, within PS417_00615at 126.575 kb on - strand, within PS417_00615at 126.952 kb on + strandat 126.952 kb on + strandat 126.952 kb on + strandat 127.063 kb on + strandat 127.064 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
remove
124,196 - PS417_00605 0.72 -0.7
124,337 + PS417_00605 0.76 +0.0
124,337 + PS417_00605 0.76 +0.8
124,338 - PS417_00605 0.76 +0.8
124,338 - PS417_00605 0.76 +0.3
124,338 - PS417_00605 0.76 +0.1
124,407 + PS417_00605 0.78 -0.3
124,408 - PS417_00605 0.78 -0.2
124,408 - PS417_00605 0.78 -0.7
124,438 + PS417_00605 0.79 +1.6
124,439 - PS417_00605 0.79 -0.4
124,446 + PS417_00605 0.79 -0.7
124,447 - PS417_00605 0.79 -3.6
124,560 + PS417_00605 0.83 +0.9
124,561 - PS417_00605 0.83 -0.7
124,561 - PS417_00605 0.83 -1.0
124,561 - PS417_00605 0.83 -0.2
124,581 - PS417_00605 0.83 -0.7
124,610 - PS417_00605 0.84 -1.4
124,610 - PS417_00605 0.84 +0.2
124,610 - PS417_00605 0.84 -1.0
124,610 - PS417_00605 0.84 +0.3
124,659 - PS417_00605 0.86 -1.4
124,768 - PS417_00605 0.89 -0.2
124,768 - PS417_00605 0.89 +1.1
124,768 - PS417_00605 0.89 -0.5
125,059 + -0.0
125,059 + -0.5
125,067 + +0.0
125,165 + +1.1
125,165 + +0.0
125,166 - +1.4
125,262 + PS417_00610 0.13 -0.4
125,306 - PS417_00610 0.18 +0.1
125,444 + PS417_00610 0.32 +1.1
125,617 + PS417_00610 0.51 +0.4
125,617 + PS417_00610 0.51 +1.7
125,618 - PS417_00610 0.51 -3.1
125,695 + PS417_00610 0.59 -0.0
125,695 + PS417_00610 0.59 +0.2
125,695 + PS417_00610 0.59 +0.6
125,750 + PS417_00610 0.65 -1.0
125,891 + PS417_00610 0.80 +0.6
125,908 + PS417_00610 0.81 +1.4
125,908 + PS417_00610 0.81 -0.7
125,981 + PS417_00610 0.89 -0.4
125,982 - PS417_00610 0.89 +0.3
126,068 + +0.1
126,182 + PS417_00615 0.13 -1.4
126,182 + PS417_00615 0.13 +1.5
126,182 + PS417_00615 0.13 -0.2
126,183 - PS417_00615 0.13 +0.6
126,183 - PS417_00615 0.13 -0.3
126,183 - PS417_00615 0.13 -1.2
126,210 + PS417_00615 0.17 -1.5
126,210 + PS417_00615 0.17 -0.7
126,211 - PS417_00615 0.17 -0.1
126,211 - PS417_00615 0.17 -0.7
126,281 + PS417_00615 0.26 -0.3
126,575 - PS417_00615 0.65 -0.3
126,952 + +0.9
126,952 + -0.1
126,952 + +0.6
127,063 + +2.6
127,064 - -0.1

Or see this region's nucleotide sequence