Strain Fitness in Pseudomonas simiae WCS417 around PS417_05990

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,331,752	-		PS417_05985	0.30	-1.3
1,332,168	-		PS417_05985	0.71	-1.5
1,332,262	-		PS417_05985	0.80	-1.9
1,332,307	-		PS417_05985	0.85	-2.3
1,332,495	-				-0.5
1,332,920	+		PS417_05990	0.41	+0.6
1,332,991	+		PS417_05990	0.48	+0.5
1,333,064	+		PS417_05990	0.55	+0.7
1,333,148	+		PS417_05990	0.63	+0.7
1,333,149	-		PS417_05990	0.64	-0.1
1,333,149	-		PS417_05990	0.64	+0.8
1,333,357	+		PS417_05990	0.84	+0.6
1,333,357	+		PS417_05990	0.84	+1.4
1,333,469	+				+1.5
1,333,469	+				+0.1
1,333,469	+				+1.5
1,333,469	+				+1.2
1,333,469	+				+0.4
1,333,469	+				-0.5
1,333,470	-				-0.0
1,333,470	-				+0.4
1,333,470	-				-0.3
1,333,470	-				+0.6
1,333,483	+				+0.2
1,333,578	+				+0.6
1,333,578	+				-1.3
1,333,578	+				-1.0
1,333,578	+				-2.0
1,333,579	-				+0.9
1,333,579	-				-1.3
1,333,643	+				+0.4
1,333,655	-				-0.6