Strain Fitness in Pseudomonas simiae WCS417 around PS417_05290

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,170,489	+				+0.0
1,170,656	+		PS417_05285	0.14	+0.6
1,170,656	+		PS417_05285	0.14	-1.4
1,170,656	+		PS417_05285	0.14	-0.1
1,170,657	-		PS417_05285	0.14	-1.4
1,170,687	-		PS417_05285	0.17	+0.5
1,170,687	-		PS417_05285	0.17	+0.9
1,171,262	+		PS417_05285	0.76	-0.0
1,171,499	-				-0.2
1,171,511	+				-0.8
1,171,578	+				+0.1
1,171,578	+				-0.0
1,171,635	+		PS417_05290	0.12	-0.2
1,172,257	-		PS417_05290	0.65	+0.1
1,172,355	+		PS417_05290	0.74	-1.1
1,172,355	+		PS417_05290	0.74	+1.2
1,172,355	+		PS417_05290	0.74	+1.9
1,172,356	-		PS417_05290	0.74	-2.3
1,172,412	+		PS417_05290	0.79	-0.1
1,172,412	+		PS417_05290	0.79	+1.3
1,172,412	+		PS417_05290	0.79	+0.5
1,172,412	+		PS417_05290	0.79	+0.8
1,172,412	+		PS417_05290	0.79	+0.7
1,172,412	+		PS417_05290	0.79	+1.1
1,172,413	-		PS417_05290	0.79	-0.0
1,172,413	-		PS417_05290	0.79	+0.8
1,172,559	+				+0.2
1,172,559	+				-0.3
1,172,560	-				+0.0
1,172,560	-				-0.8
1,172,560	-				-1.2
1,172,579	+				-0.8
1,172,613	-				+1.5
1,172,613	-				-0.1
1,172,693	+				+0.5
1,172,693	+				-1.0
1,172,693	+				-0.0
1,172,693	+				-0.2
1,172,694	-				-1.5
1,172,694	-				+0.0
1,172,694	-				-0.0
1,172,694	-				-0.0
1,172,694	-				+0.3
1,172,697	+				+1.9
1,172,806	-				-0.1
1,172,806	-				+0.3
1,172,810	-				-0.0
1,172,810	-				-0.2
1,172,810	-				-1.7
1,172,810	-				+0.5
1,172,810	-				+1.5
1,173,002	-				+1.3
1,173,007	+				-1.0
1,173,007	+				+0.2
1,173,291	+				+0.2
1,173,292	-				-0.0
1,173,320	+				+0.7
1,173,320	+				-0.0
1,173,321	-				-2.5
1,173,324	+				+1.1
1,173,331	+				+0.4
1,173,332	-				+1.5
1,173,332	-				-2.0
1,173,332	-				-0.3
1,173,332	-				-1.3
1,173,335	+				+0.2
1,173,336	-				-0.5
1,173,336	-				+0.3
1,173,336	-				-0.2
1,173,442	-				-0.5
1,173,451	+				+0.2
1,173,452	-				+0.3
1,173,460	-				-0.5
1,173,541	-				+1.9
1,173,541	-				-0.3
1,173,595	-				+1.5
1,173,658	+				-2.5
1,173,659	-				-0.3