Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0696 and PP_0697 overlap by 4 nucleotides PP_0697 and PP_5455 are separated by 57 nucleotides PP_5455 and PP_0698 overlap by 61 nucleotides
PP_0696: PP_0696 - conserved protein of unknown function, at 809,434 to 810,309
_0696
PP_0697: PP_0697 - ribosomal-protein-S18-alanine N-acetyltransferase, at 810,306 to 810,761
_0697
PP_5455: PP_5455 - conserved exported protein of unknown function, at 810,819 to 811,394
_5455
PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251
_0698
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 810.359 kb on - strand, within PP_0697 at 810.359 kb on - strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.363 kb on - strand, within PP_0697 at 810.372 kb on + strand, within PP_0697 at 810.588 kb on + strand, within PP_0697 at 810.589 kb on - strand, within PP_0697 at 810.645 kb on + strand, within PP_0697 at 810.646 kb on - strand, within PP_0697 at 810.655 kb on - strand, within PP_0697 at 810.663 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.700 kb on - strand, within PP_0697 at 810.743 kb on + strand at 810.744 kb on - strand at 810.813 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.852 kb on - strand at 810.946 kb on + strand, within PP_5455 at 810.947 kb on - strand, within PP_5455 at 810.947 kb on - strand, within PP_5455 at 810.960 kb on + strand, within PP_5455 at 810.968 kb on - strand, within PP_5455 at 810.968 kb on - strand, within PP_5455 at 811.036 kb on + strand, within PP_5455 at 811.190 kb on + strand, within PP_5455 at 811.211 kb on + strand, within PP_5455 at 811.212 kb on - strand, within PP_5455 at 811.213 kb on + strand, within PP_5455 at 811.214 kb on - strand, within PP_5455 at 811.379 kb on + strand at 811.379 kb on + strand at 811.379 kb on + strand at 811.379 kb on + strand at 811.485 kb on + strand, within PP_0698 at 811.611 kb on + strand, within PP_0698 at 811.612 kb on - strand, within PP_0698 at 811.788 kb on + strand, within PP_0698 at 811.788 kb on + strand, within PP_0698 at 811.788 kb on + strand, within PP_0698 at 811.789 kb on - strand, within PP_0698 at 811.789 kb on - strand, within PP_0698 at 811.789 kb on - strand at 812.135 kb on + strand, within PP_0698 at 812.136 kb on - strand, within PP_0698 at 812.136 kb on - strand, within PP_0698 at 812.136 kb on - strand, within PP_0698 at 812.136 kb on - strand, within PP_0698 at 812.136 kb on - strand, within PP_0698 at 812.301 kb on - strand at 812.301 kb on - strand at 812.301 kb on - strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.323 kb on - strand at 812.361 kb on + strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 810,359 - PP_0697 0.12 -2.1 810,359 - PP_0697 0.12 -0.6 810,362 + PP_0697 0.12 +1.2 810,362 + PP_0697 0.12 +0.6 810,362 + PP_0697 0.12 -1.2 810,362 + PP_0697 0.12 -2.3 810,362 + PP_0697 0.12 +0.0 810,363 - PP_0697 0.12 +0.8 810,372 + PP_0697 0.14 +0.3 810,588 + PP_0697 0.62 -2.2 810,589 - PP_0697 0.62 -1.7 810,645 + PP_0697 0.74 -1.0 810,646 - PP_0697 0.75 +0.3 810,655 - PP_0697 0.77 -0.9 810,663 + PP_0697 0.78 -2.0 810,696 + PP_0697 0.86 -1.2 810,696 + PP_0697 0.86 -0.3 810,696 + PP_0697 0.86 -2.6 810,696 + PP_0697 0.86 -1.9 810,697 - PP_0697 0.86 -0.9 810,697 - PP_0697 0.86 -0.6 810,697 - PP_0697 0.86 -1.7 810,697 - PP_0697 0.86 +0.4 810,700 - PP_0697 0.86 -1.1 810,743 + +1.1 810,744 - -2.2 810,813 + +2.4 810,851 + -1.1 810,851 + +0.2 810,851 + -0.7 810,851 + +0.6 810,852 - +0.3 810,946 + PP_5455 0.22 -2.7 810,947 - PP_5455 0.22 -0.2 810,947 - PP_5455 0.22 -3.4 810,960 + PP_5455 0.24 -0.7 810,968 - PP_5455 0.26 +0.5 810,968 - PP_5455 0.26 -1.5 811,036 + PP_5455 0.38 -0.5 811,190 + PP_5455 0.64 -0.3 811,211 + PP_5455 0.68 -0.6 811,212 - PP_5455 0.68 -1.7 811,213 + PP_5455 0.68 -2.3 811,214 - PP_5455 0.69 +0.1 811,379 + -0.5 811,379 + -2.6 811,379 + +2.9 811,379 + +0.2 811,485 + PP_0698 0.16 -1.3 811,611 + PP_0698 0.30 -0.7 811,612 - PP_0698 0.30 +0.7 811,788 + PP_0698 0.49 +0.9 811,788 + PP_0698 0.49 -1.5 811,788 + PP_0698 0.49 -0.9 811,789 - PP_0698 0.50 -0.3 811,789 - PP_0698 0.50 -2.9 811,789 - +1.0 812,135 + PP_0698 0.87 -2.5 812,136 - PP_0698 0.87 -0.2 812,136 - PP_0698 0.87 -0.6 812,136 - PP_0698 0.87 -0.4 812,136 - PP_0698 0.87 -0.1 812,136 - PP_0698 0.87 -1.4 812,301 - +1.1 812,301 - -0.8 812,301 - +1.4 812,312 + +2.8 812,312 + -0.2 812,312 + +1.2 812,312 + -0.8 812,313 - +1.3 812,313 - -0.7 812,313 - -0.8 812,313 - -0.4 812,323 - -1.2 812,361 + -0.2 812,362 - +1.0 812,362 - +2.8 812,362 - +1.4 812,366 - -1.8
Or see this region's nucleotide sequence