Strain Fitness in Pseudomonas putida KT2440 around PP_5103

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5101 and PP_5102 are separated by 9 nucleotidesPP_5102 and PP_5103 are separated by 173 nucleotidesPP_5103 and PP_5104 are separated by 9 nucleotidesPP_5104 and PP_5105 are separated by 54 nucleotides PP_5101: PP_5101 - coproporphyrinogen/heterocyclic compound oxidase (aerobic), at 5,823,065 to 5,824,240 _5101 PP_5102: PP_5102 - conserved hypothetical protein, at 5,824,250 to 5,824,576 _5102 PP_5103: PP_5103 - tRNA (guanine-N(7)-)-methyltransferase, at 5,824,750 to 5,825,472 _5103 PP_5104: PP_5104 - thiazole synthase, at 5,825,482 to 5,826,294 _5104 PP_5105: PP_5105 - Sulfur carrier protein ThiS, at 5,826,349 to 5,826,627 _5105 Position (kb) 5824 5825 5826Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5823.813 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.860 kb on + strand, within PP_5101at 5823.968 kb on + strand, within PP_5101at 5823.969 kb on - strand, within PP_5101at 5824.119 kb on + strand, within PP_5101at 5824.120 kb on - strand, within PP_5101at 5824.158 kb on + strandat 5824.158 kb on + strandat 5824.226 kb on + strandat 5824.260 kb on + strandat 5824.329 kb on + strand, within PP_5102at 5824.330 kb on - strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.463 kb on + strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.464 kb on - strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.508 kb on + strand, within PP_5102at 5824.509 kb on - strand, within PP_5102at 5824.527 kb on + strand, within PP_5102at 5824.527 kb on + strand, within PP_5102at 5824.543 kb on - strand, within PP_5102at 5824.592 kb on + strandat 5824.592 kb on + strandat 5824.592 kb on + strandat 5824.593 kb on - strandat 5824.670 kb on + strandat 5824.671 kb on - strandat 5824.693 kb on - strandat 5824.741 kb on - strandat 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.850 kb on + strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.851 kb on - strand, within PP_5103at 5824.911 kb on - strand, within PP_5103at 5824.911 kb on - strand, within PP_5103at 5824.920 kb on - strand, within PP_5103at 5825.074 kb on - strand, within PP_5103at 5825.117 kb on + strand, within PP_5103at 5825.118 kb on - strand, within PP_5103at 5825.118 kb on - strand, within PP_5103at 5825.316 kb on + strand, within PP_5103at 5825.336 kb on + strand, within PP_5103at 5825.336 kb on + strand, within PP_5103at 5825.337 kb on - strand, within PP_5103at 5825.483 kb on + strandat 5825.484 kb on - strandat 5825.539 kb on - strandat 5825.552 kb on + strandat 5825.552 kb on + strandat 5825.552 kb on + strandat 5825.553 kb on - strandat 5825.716 kb on + strand, within PP_5104at 5825.750 kb on + strand, within PP_5104at 5825.750 kb on + strand, within PP_5104at 5825.750 kb on + strand, within PP_5104at 5825.858 kb on + strand, within PP_5104at 5825.858 kb on + strand, within PP_5104at 5826.077 kb on + strand, within PP_5104at 5826.077 kb on + strand, within PP_5104at 5826.077 kb on + strand, within PP_5104at 5826.077 kb on + strand, within PP_5104at 5826.078 kb on - strand, within PP_5104at 5826.078 kb on - strand, within PP_5104at 5826.094 kb on + strand, within PP_5104at 5826.094 kb on + strand, within PP_5104at 5826.094 kb on + strand, within PP_5104at 5826.095 kb on - strand, within PP_5104at 5826.095 kb on - strand, within PP_5104at 5826.212 kb on + strand, within PP_5104at 5826.212 kb on + strand, within PP_5104at 5826.212 kb on + strand, within PP_5104at 5826.213 kb on - strandat 5826.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
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5,823,813 + PP_5101 0.64 -2.1
5,823,860 + PP_5101 0.68 -0.1
5,823,860 + PP_5101 0.68 -2.2
5,823,860 + PP_5101 0.68 -0.0
5,823,968 + PP_5101 0.77 -2.3
5,823,969 - PP_5101 0.77 +0.4
5,824,119 + PP_5101 0.90 -1.5
5,824,120 - PP_5101 0.90 -0.8
5,824,158 + -1.2
5,824,158 + -1.7
5,824,226 + -1.9
5,824,260 + +0.5
5,824,329 + PP_5102 0.24 -1.5
5,824,330 - PP_5102 0.24 +0.7
5,824,463 + PP_5102 0.65 +0.3
5,824,463 + PP_5102 0.65 -0.3
5,824,463 + PP_5102 0.65 +0.8
5,824,464 - PP_5102 0.65 +2.0
5,824,464 - PP_5102 0.65 -2.7
5,824,464 - PP_5102 0.65 -0.7
5,824,508 + PP_5102 0.79 -1.1
5,824,508 + PP_5102 0.79 -2.0
5,824,508 + PP_5102 0.79 +1.1
5,824,508 + PP_5102 0.79 +1.0
5,824,509 - PP_5102 0.79 -0.3
5,824,527 + PP_5102 0.85 +2.1
5,824,527 + PP_5102 0.85 -0.3
5,824,543 - PP_5102 0.90 +0.3
5,824,592 + -1.0
5,824,592 + +0.8
5,824,592 + +0.5
5,824,593 - +1.2
5,824,670 + +1.7
5,824,671 - -0.3
5,824,693 - -1.7
5,824,741 - -2.0
5,824,850 + PP_5103 0.14 -2.3
5,824,850 + PP_5103 0.14 -0.2
5,824,850 + PP_5103 0.14 -0.9
5,824,850 + PP_5103 0.14 -3.2
5,824,850 + PP_5103 0.14 +0.8
5,824,850 + PP_5103 0.14 +0.4
5,824,850 + PP_5103 0.14 -0.8
5,824,850 + PP_5103 0.14 +0.2
5,824,850 + PP_5103 0.14 +0.7
5,824,850 + PP_5103 0.14 -1.6
5,824,851 - PP_5103 0.14 -1.1
5,824,851 - PP_5103 0.14 +0.0
5,824,851 - PP_5103 0.14 -0.9
5,824,911 - PP_5103 0.22 +0.4
5,824,911 - PP_5103 0.22 +0.5
5,824,920 - PP_5103 0.24 +1.7
5,825,074 - PP_5103 0.45 -1.7
5,825,117 + PP_5103 0.51 -0.9
5,825,118 - PP_5103 0.51 +0.8
5,825,118 - PP_5103 0.51 +0.1
5,825,316 + PP_5103 0.78 -1.9
5,825,336 + PP_5103 0.81 +0.2
5,825,336 + PP_5103 0.81 -0.7
5,825,337 - PP_5103 0.81 -0.9
5,825,483 + +1.0
5,825,484 - -1.5
5,825,539 - -1.0
5,825,552 + -2.4
5,825,552 + -0.1
5,825,552 + -0.5
5,825,553 - -0.0
5,825,716 + PP_5104 0.29 -0.3
5,825,750 + PP_5104 0.33 +0.4
5,825,750 + PP_5104 0.33 +0.9
5,825,750 + PP_5104 0.33 +0.6
5,825,858 + PP_5104 0.46 -3.2
5,825,858 + PP_5104 0.46 +0.7
5,826,077 + PP_5104 0.73 -0.2
5,826,077 + PP_5104 0.73 -2.0
5,826,077 + PP_5104 0.73 +1.0
5,826,077 + PP_5104 0.73 -0.3
5,826,078 - PP_5104 0.73 -1.7
5,826,078 - PP_5104 0.73 +1.1
5,826,094 + PP_5104 0.75 +1.4
5,826,094 + PP_5104 0.75 +1.5
5,826,094 + PP_5104 0.75 -0.6
5,826,095 - PP_5104 0.75 +1.1
5,826,095 - PP_5104 0.75 -1.1
5,826,212 + PP_5104 0.90 -1.8
5,826,212 + PP_5104 0.90 +0.3
5,826,212 + PP_5104 0.90 -1.1
5,826,213 - +0.2
5,826,213 - -2.3

Or see this region's nucleotide sequence