Strain Fitness in Pseudomonas putida KT2440 around PP_2007

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
2,276,402	+		PP_2006	0.44	+0.8
2,276,402	+		PP_2006	0.44	-3.3
2,276,556	+		PP_2006	0.53	+1.6
2,276,557	-		PP_2006	0.53	+0.6
2,276,558	+		PP_2006	0.54	-1.4
2,276,558	+		PP_2006	0.54	+1.3
2,276,558	+		PP_2006	0.54	+0.8
2,276,558	+		PP_2006	0.54	+2.0
2,276,558	+		PP_2006	0.54	-0.2
2,276,558	+		PP_2006	0.54	-0.0
2,276,558	+		PP_2006	0.54	-0.7
2,276,559	-		PP_2006	0.54	+0.9
2,276,559	-		PP_2006	0.54	-0.3
2,276,564	+		PP_2006	0.54	+0.8
2,276,564	+		PP_2006	0.54	+2.9
2,276,564	+		PP_2006	0.54	+0.6
2,276,564	+		PP_2006	0.54	-0.7
2,276,564	+		PP_2006	0.54	-0.7
2,276,564	+		PP_2006	0.54	+0.9
2,276,565	-		PP_2006	0.54	+3.7
2,276,565	-		PP_2006	0.54	-0.4
2,276,565	-				+0.9
2,276,565	-		PP_2006	0.54	-0.6
2,276,565	-		PP_2006	0.54	+1.1
2,276,565	-		PP_2006	0.54	-0.1
2,276,565	-		PP_2006	0.54	+1.3
2,276,565	-		PP_2006	0.54	+0.0
2,276,629	+		PP_2006	0.58	-0.5
2,276,630	-		PP_2006	0.58	-2.2
2,276,630	-		PP_2006	0.58	-1.6
2,276,810	+		PP_2006	0.69	-0.4
2,276,811	-		PP_2006	0.69	+0.5
2,276,867	+		PP_2006	0.72	-1.4
2,276,868	-		PP_2006	0.72	+3.3
2,276,898	-		PP_2006	0.74	+3.2
2,276,921	+		PP_2006	0.76	-1.9
2,276,921	+		PP_2006	0.76	+3.7
2,276,921	+		PP_2006	0.76	+0.5
2,276,921	+		PP_2006	0.76	+0.5
2,276,921	+		PP_2006	0.76	-1.1
2,276,921	+		PP_2006	0.76	+0.4
2,276,922	-		PP_2006	0.76	+0.5
2,276,922	-		PP_2006	0.76	-0.3
2,276,922	-		PP_2006	0.76	+0.2
2,276,922	-		PP_2006	0.76	-0.6
2,276,922	-		PP_2006	0.76	-0.3
2,276,922	-		PP_2006	0.76	-1.5
2,276,922	-		PP_2006	0.76	+0.5
2,276,922	-		PP_2006	0.76	+0.9
2,276,922	-		PP_2006	0.76	-1.0
2,276,922	-		PP_2006	0.76	+0.7
2,276,947	+		PP_2006	0.77	-2.5
2,276,948	-		PP_2006	0.77	+2.2
2,276,948	-		PP_2006	0.77	+1.5
2,277,158	-				+1.7
2,277,193	+				+0.6
2,277,194	-				-2.0
2,277,194	-				-2.0
2,277,213	-				-1.1
2,277,354	+				-1.0
2,277,354	+				-3.4
2,277,354	+				-0.3
2,277,354	+				+0.3
2,277,355	-				+0.2
2,277,355	-				+1.9
2,277,355	-				+0.2
2,277,355	-				-2.6
2,277,381	+				-0.1
2,277,398	-				-1.0
2,277,556	+		PP_2007	0.17	+1.2
2,277,556	+		PP_2007	0.17	-0.5
2,277,556	+		PP_2007	0.17	+0.3
2,277,557	-		PP_2007	0.17	+0.5
2,277,654	+				+1.0
2,277,659	-		PP_2007	0.25	-0.4
2,277,686	-		PP_2007	0.27	+3.6
2,277,687	+		PP_2007	0.28	-1.5
2,277,688	-		PP_2007	0.28	-1.1
2,277,688	-		PP_2007	0.28	-1.6
2,277,688	-		PP_2007	0.28	+0.7
2,277,753	+		PP_2007	0.33	+1.6
2,277,753	+		PP_2007	0.33	+3.9
2,277,797	+		PP_2007	0.36	+0.4
2,277,797	+		PP_2007	0.36	+0.4
2,277,798	-		PP_2007	0.37	+1.5
2,277,798	-		PP_2007	0.37	+0.9
2,277,829	-		PP_2007	0.39	+0.8
2,277,912	+		PP_2007	0.46	+0.7
2,277,912	+		PP_2007	0.46	+0.7
2,277,912	+		PP_2007	0.46	+1.7
2,277,913	-		PP_2007	0.46	+1.3
2,277,985	+		PP_2007	0.52	-1.2
2,277,989	+		PP_2007	0.52	+1.3
2,277,989	+		PP_2007	0.52	-0.8
2,277,990	-		PP_2007	0.52	+1.9
2,278,023	+		PP_2007	0.55	-0.1
2,278,023	+		PP_2007	0.55	+1.1
2,278,023	+		PP_2007	0.55	+0.8
2,278,023	+		PP_2007	0.55	-0.2
2,278,023	+		PP_2007	0.55	+0.7
2,278,024	-				+1.4
2,278,029	+		PP_2007	0.55	-2.1
2,278,029	+		PP_2007	0.55	+2.2
2,278,029	+		PP_2007	0.55	+0.4
2,278,029	+		PP_2007	0.55	+0.2
2,278,029	+		PP_2007	0.55	-0.3
2,278,030	-		PP_2007	0.55	+0.4
2,278,030	-		PP_2007	0.55	-0.4
2,278,030	-		PP_2007	0.55	+0.5
2,278,030	-		PP_2007	0.55	-1.5
2,278,030	-		PP_2007	0.55	-0.3
2,278,030	-		PP_2007	0.55	+0.8
2,278,030	-		PP_2007	0.55	-2.1
2,278,096	+		PP_2007	0.61	-0.7
2,278,097	-		PP_2007	0.61	+1.2
2,278,109	+		PP_2007	0.62	-1.8
2,278,110	-		PP_2007	0.62	+0.2
2,278,128	+		PP_2007	0.63	-2.4
2,278,128	+		PP_2007	0.63	-2.1
2,278,129	-		PP_2007	0.63	+0.2
2,278,169	+		PP_2007	0.67	-0.3
2,278,169	+		PP_2007	0.67	+0.6
2,278,195	+		PP_2007	0.69	-1.4
2,278,195	+		PP_2007	0.69	-1.9
2,278,382	+		PP_2007	0.84	-2.9
2,278,382	+		PP_2007	0.84	+1.0
2,278,382	+		PP_2007	0.84	-0.6
2,278,382	+		PP_2007	0.84	+0.8
2,278,383	-		PP_2007	0.84	+1.6
2,278,383	-		PP_2007	0.84	+0.9
2,278,383	-		PP_2007	0.84	+0.6
2,278,383	-		PP_2007	0.84	+0.8
2,278,383	-		PP_2007	0.84	+2.1
2,278,384	+		PP_2007	0.84	-0.4
2,278,384	+		PP_2007	0.84	+0.5
2,278,384	+		PP_2007	0.84	-1.2
2,278,384	+		PP_2007	0.84	+0.3
2,278,385	-		PP_2007	0.84	+0.5
2,278,385	-		PP_2007	0.84	-1.8
2,278,385	-		PP_2007	0.84	+0.2
2,278,479	+				+1.3
2,278,479	+				-0.3
2,278,605	+				+0.6
2,278,718	-				+2.1
2,278,718	-				-0.5
2,278,720	-				+0.4
2,278,779	+				+1.8
2,278,822	+				+0.9
2,278,823	-				+0.7
2,278,823	-				+0.2
2,278,823	-				-0.1
2,278,956	+				-0.9
2,278,956	+				+1.2
2,279,041	+				-0.1
2,279,042	-				-2.0
2,279,042	-				-1.1
2,279,119	+		PP_2008	0.12	-1.5
2,279,120	-		PP_2008	0.12	-0.2
2,279,219	+		PP_2008	0.17	+0.4
2,279,242	+		PP_2008	0.18	-1.6
2,279,265	+		PP_2008	0.19	-0.5
2,279,265	+		PP_2008	0.19	-0.3
2,279,265	+		PP_2008	0.19	+0.2
2,279,266	-		PP_2008	0.19	-1.0
2,279,413	+		PP_2008	0.27	+0.4
2,279,413	+		PP_2008	0.27	+1.0
2,279,414	-		PP_2008	0.27	-0.4
2,279,414	-		PP_2008	0.27	+0.7
2,279,414	-		PP_2008	0.27	+0.1