Strain Fitness in Pseudomonas putida KT2440 around PP_0906

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
1,044,371	-		PP_0904	0.11	-0.0
1,044,435	-		PP_0904	0.20	-0.2
1,044,457	+		PP_0904	0.23	-2.6
1,044,457	+		PP_0904	0.23	-1.5
1,044,457	+		PP_0904	0.23	+0.0
1,044,461	+		PP_0904	0.24	-2.2
1,044,461	+		PP_0904	0.24	+1.5
1,044,461	+		PP_0904	0.24	-2.6
1,044,462	-		PP_0904	0.24	-1.8
1,044,462	-		PP_0904	0.24	+0.6
1,044,462	-		PP_0904	0.24	-1.5
1,044,767	+		PP_0904	0.68	+1.3
1,044,768	-		PP_0904	0.68	-0.5
1,044,768	-		PP_0904	0.68	-2.9
1,044,780	+		PP_0904	0.69	-0.3
1,044,780	+		PP_0904	0.69	+1.1
1,044,781	-		PP_0904	0.70	+0.4
1,044,781	-		PP_0904	0.70	+0.9
1,044,781	-		PP_0904	0.70	+2.0
1,044,792	+		PP_0904	0.71	+0.6
1,044,793	-		PP_0904	0.71	-1.3
1,044,793	-		PP_0904	0.71	+2.8
1,044,900	+		PP_0904	0.86	-0.4
1,044,901	-		PP_0904	0.87	+1.5
1,044,901	-		PP_0904	0.87	-2.2
1,044,993	-				-0.8
1,045,028	+		PP_0905	0.15	+0.8
1,045,029	-		PP_0905	0.15	-0.0
1,045,237	+				+1.3
1,045,237	+				+1.5
1,045,382	+				+0.6
1,045,382	+				+1.3
1,045,382	+				+1.5
1,045,407	+				+0.7
1,045,408	-				+1.6
1,045,408	-				-0.0
1,045,447	-				+0.6
1,045,603	+				-0.7
1,045,647	+		PP_0906	0.10	-0.6
1,045,647	+		PP_0906	0.10	+0.6
1,045,682	+		PP_0906	0.11	+4.2
1,045,682	+		PP_0906	0.11	+0.9
1,045,683	-		PP_0906	0.11	-0.3
1,045,683	-		PP_0906	0.11	+0.4
1,045,799	-		PP_0906	0.15	+0.3
1,045,858	+		PP_0906	0.17	+0.3
1,045,858	+		PP_0906	0.17	-0.0
1,045,859	-		PP_0906	0.17	-1.1
1,045,859	-		PP_0906	0.17	+0.4
1,045,859	-		PP_0906	0.17	-0.3
1,045,859	-		PP_0906	0.17	+0.7
1,045,859	-		PP_0906	0.17	-0.5
1,045,859	-		PP_0906	0.17	+0.5
1,045,862	+		PP_0906	0.17	+0.4
1,045,862	+		PP_0906	0.17	+0.4
1,045,862	+				+1.0
1,045,862	+		PP_0906	0.17	-0.4
1,045,862	+		PP_0906	0.17	-0.8
1,045,863	-		PP_0906	0.17	-2.0
1,045,863	-		PP_0906	0.17	-0.8
1,045,863	-		PP_0906	0.17	+1.1
1,045,883	+		PP_0906	0.18	-1.9
1,045,883	+		PP_0906	0.18	-2.5
1,046,087	+		PP_0906	0.25	+2.1
1,046,087	+		PP_0906	0.25	+1.1
1,046,088	-		PP_0906	0.25	+1.7
1,046,088	-		PP_0906	0.25	-0.5
1,046,090	+		PP_0906	0.25	+2.1
1,046,091	-		PP_0906	0.25	-0.8
1,046,091	-		PP_0906	0.25	+1.5
1,046,121	-		PP_0906	0.26	-0.6
1,046,150	+		PP_0906	0.27	+2.9
1,046,151	-		PP_0906	0.27	+1.0
1,046,506	+		PP_0906	0.39	-2.0
1,046,507	-		PP_0906	0.39	+0.1
1,046,606	+		PP_0906	0.42	-1.0
1,046,607	-		PP_0906	0.42	+0.3
1,046,607	-		PP_0906	0.42	-0.1
1,046,607	-		PP_0906	0.42	-0.4
1,046,609	+		PP_0906	0.42	+0.9
1,046,663	+		PP_0906	0.44	-0.1
1,047,044	+		PP_0906	0.56	+0.3
1,047,044	+		PP_0906	0.56	+0.6
1,047,044	+		PP_0906	0.56	+0.5
1,047,044	+		PP_0906	0.56	-0.1
1,047,044	+		PP_0906	0.56	-0.6
1,047,044	+		PP_0906	0.56	-0.9
1,047,045	-		PP_0906	0.56	+1.1
1,047,045	-		PP_0906	0.56	-0.0
1,047,045	-		PP_0906	0.56	+1.6
1,047,045	-		PP_0906	0.56	+0.6
1,047,045	-		PP_0906	0.56	-1.6
1,047,237	-		PP_0906	0.63	-2.1
1,047,262	+		PP_0906	0.63	-2.9
1,047,262	+		PP_0906	0.63	+0.7
1,047,262	+		PP_0906	0.63	+4.2
1,047,263	-		PP_0906	0.63	-1.3
1,047,430	+		PP_0906	0.69	+0.7
1,047,534	+		PP_0906	0.72	-0.2
1,047,537	-		PP_0906	0.72	+0.4
1,047,575	+		PP_0906	0.74	+1.7
1,047,576	-		PP_0906	0.74	-2.5
1,047,576	-		PP_0906	0.74	+1.3
1,047,576	-		PP_0906	0.74	-0.2
1,047,710	+		PP_0906	0.78	-1.1
1,047,711	-		PP_0906	0.78	+4.1
1,047,711	-		PP_0906	0.78	+0.5
1,047,749	+		PP_0906	0.79	+1.7
1,047,947	+		PP_0906	0.86	+2.4
1,047,947	+		PP_0906	0.86	+0.4
1,047,948	-		PP_0906	0.86	+1.2
1,047,960	-		PP_0906	0.86	-1.0
1,047,960	-		PP_0906	0.86	-0.8
1,047,960	-		PP_0906	0.86	+0.3
1,047,960	-		PP_0906	0.86	-0.6
1,047,960	-		PP_0906	0.86	+2.3
1,047,960	-		PP_0906	0.86	-2.2
1,047,998	-		PP_0906	0.88	-0.6
1,048,097	+				+1.7
1,048,143	-				-0.8
1,048,191	+				-0.3
1,048,192	-				+1.1
1,048,192	-				-0.5
1,048,192	-				+2.0
1,048,193	+				-0.4
1,048,193	+				+1.6
1,048,194	-				+1.3
1,048,194	-				+0.6
1,048,439	+				-0.5
1,048,439	+				+0.8
1,048,439	+				+0.9
1,048,440	-				-1.4
1,048,445	+				+0.6
1,048,446	-				-0.6
1,048,520	+		PP_0907	0.12	-2.6
1,048,520	+		PP_0907	0.12	-2.0
1,048,520	+		PP_0907	0.12	+1.3
1,048,641	+		PP_0907	0.21	+0.4
1,048,641	+		PP_0907	0.21	-2.6
1,048,641	+		PP_0907	0.21	+1.1
1,048,641	+		PP_0907	0.21	+0.5
1,048,642	-		PP_0907	0.22	+1.4
1,048,642	-		PP_0907	0.22	-1.2
1,048,642	-		PP_0907	0.22	+0.6
1,048,642	-		PP_0907	0.22	+1.1
1,048,642	-		PP_0907	0.22	+1.2
1,048,642	-		PP_0907	0.22	-3.2
1,048,657	-		PP_0907	0.23	+0.5
1,048,657	-		PP_0907	0.23	+1.6
1,048,665	+		PP_0907	0.23	+0.2
1,048,665	+		PP_0907	0.23	-0.1
1,048,665	+				+1.8
1,048,665	+				+0.2
1,048,666	-		PP_0907	0.24	-0.1
1,048,666	-		PP_0907	0.24	-1.7
1,048,666	-		PP_0907	0.24	+0.1
1,048,669	+		PP_0907	0.24	+1.8
1,048,670	-		PP_0907	0.24	-0.2
1,048,670	-		PP_0907	0.24	+1.9
1,048,781	+		PP_0907	0.33	+2.7
1,048,931	+		PP_0907	0.45	+0.4
1,048,931	+		PP_0907	0.45	-0.0
1,048,932	-		PP_0907	0.45	-0.4
1,048,932	-		PP_0907	0.45	+0.8
1,048,935	+		PP_0907	0.46	-0.2
1,048,936	-		PP_0907	0.46	+0.4
1,048,936	-		PP_0907	0.46	+0.6
1,048,936	-		PP_0907	0.46	+0.8
1,048,986	+		PP_0907	0.50	+2.2
1,048,986	+		PP_0907	0.50	+0.2
1,049,065	+		PP_0907	0.56	-0.0