Strain Fitness in Pseudomonas putida KT2440 around PP_0867

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
1,004,138	+		PP_0866	0.16	-0.1
1,004,138	+		PP_0866	0.16	-0.4
1,004,138	+		PP_0866	0.16	+2.9
1,004,497	+		PP_0866	0.53	-1.5
1,004,668	+		PP_0866	0.70	-1.1
1,004,668	+		PP_0866	0.70	+0.8
1,004,668	+		PP_0866	0.70	+1.0
1,004,668	+		PP_0866	0.70	+0.8
1,004,669	-		PP_0866	0.70	-0.6
1,004,669	-		PP_0866	0.70	+0.1
1,004,670	+		PP_0866	0.70	-2.8
1,004,670	+		PP_0866	0.70	-1.0
1,004,670	+		PP_0866	0.70	-2.1
1,004,670	+		PP_0866	0.70	-0.4
1,004,670	+		PP_0866	0.70	+0.9
1,004,670	+		PP_0866	0.70	-0.2
1,004,670	+		PP_0866	0.70	-0.6
1,004,670	+		PP_0866	0.70	-0.9
1,004,670	+		PP_0866	0.70	-0.5
1,004,670	+		PP_0866	0.70	+0.8
1,004,670	+		PP_0866	0.70	+1.0
1,004,671	-		PP_0866	0.70	+0.9
1,004,671	-		PP_0866	0.70	-0.7
1,004,671	-		PP_0866	0.70	+1.6
1,004,671	-		PP_0866	0.70	+0.2
1,004,671	-		PP_0866	0.70	-1.2
1,004,671	-		PP_0866	0.70	+1.0
1,004,671	-		PP_0866	0.70	-0.2
1,004,671	-		PP_0866	0.70	+0.2
1,004,671	-		PP_0866	0.70	+1.2
1,004,671	-		PP_0866	0.70	-0.3
1,004,699	+		PP_0866	0.73	-0.2
1,004,700	-		PP_0866	0.73	+0.9
1,004,775	+		PP_0866	0.81	-0.0
1,004,775	+		PP_0866	0.81	-0.4
1,004,776	-		PP_0866	0.81	+0.4
1,004,776	-		PP_0866	0.81	-0.8
1,004,776	-		PP_0866	0.81	+0.6
1,004,863	+		PP_0866	0.90	-2.3
1,004,872	+				+0.1
1,004,872	+				+0.3
1,004,949	+				+2.0
1,005,169	+				-0.1
1,005,391	+		PP_0867	0.13	-1.1
1,005,483	+		PP_0867	0.17	+1.0
1,005,513	+		PP_0867	0.18	-2.3
1,005,513	+		PP_0867	0.18	-0.4
1,005,639	+		PP_0867	0.23	+0.4
1,005,650	-		PP_0867	0.24	+0.6
1,005,713	+		PP_0867	0.26	-1.2
1,005,713	+		PP_0867	0.26	-1.5
1,005,974	+		PP_0867	0.37	+0.9
1,005,975	-		PP_0867	0.37	-0.7
1,006,097	+		PP_0867	0.42	-0.3
1,006,097	+		PP_0867	0.42	+1.2
1,006,098	-		PP_0867	0.42	-1.1
1,006,098	-		PP_0867	0.42	+1.5
1,006,098	-		PP_0867	0.42	+3.3
1,006,098	-		PP_0867	0.42	+0.4
1,006,143	-		PP_0867	0.44	+0.9
1,006,143	-		PP_0867	0.44	-1.9
1,006,143	-		PP_0867	0.44	-0.8
1,006,176	-		PP_0867	0.45	-1.6
1,006,181	+		PP_0867	0.46	+0.3
1,006,182	-		PP_0867	0.46	+0.0
1,006,262	+		PP_0867	0.49	+2.3
1,006,263	-		PP_0867	0.49	-0.7
1,006,265	+		PP_0867	0.49	-2.1
1,006,266	-		PP_0867	0.49	+1.3
1,006,293	+		PP_0867	0.50	+0.5
1,006,293	+		PP_0867	0.50	+1.0
1,006,293	+		PP_0867	0.50	-1.9
1,006,294	-				+0.4
1,006,294	-		PP_0867	0.50	-0.8
1,006,337	+		PP_0867	0.52	+0.4
1,006,421	+		PP_0867	0.56	+0.3
1,006,422	-		PP_0867	0.56	+1.0
1,006,550	+		PP_0867	0.61	+0.4
1,006,551	+		PP_0867	0.61	+1.5
1,006,551	-		PP_0867	0.61	+2.3
1,006,724	+		PP_0867	0.68	-0.2
1,006,725	-		PP_0867	0.68	-1.0
1,006,750	-		PP_0867	0.69	-0.1
1,006,760	+		PP_0867	0.70	+1.0
1,006,761	-		PP_0867	0.70	+0.1
1,006,787	+		PP_0867	0.71	+3.2
1,006,787	+		PP_0867	0.71	+0.0
1,006,787	+		PP_0867	0.71	-0.9
1,006,788	-		PP_0867	0.71	-1.6
1,006,788	-		PP_0867	0.71	+0.1
1,006,788	-		PP_0867	0.71	+2.0
1,006,822	+		PP_0867	0.72	-0.2
1,006,916	+		PP_0867	0.76	-0.7
1,006,943	+		PP_0867	0.77	+0.6
1,006,944	-		PP_0867	0.77	-0.7
1,006,944	-		PP_0867	0.77	-0.1
1,007,015	+		PP_0867	0.80	+2.8
1,007,069	+		PP_0867	0.82	+0.1
1,007,069	+		PP_0867	0.82	-2.2
1,007,070	-		PP_0867	0.82	+1.0
1,007,075	+		PP_0867	0.82	-0.7
1,007,075	+		PP_0867	0.82	+0.1
1,007,076	-		PP_0867	0.83	+0.1
1,007,076	-		PP_0867	0.83	-1.0
1,007,076	-		PP_0867	0.83	+0.8
1,007,077	+		PP_0867	0.83	-0.4
1,007,078	-		PP_0867	0.83	-1.1
1,007,090	+		PP_0867	0.83	+0.2
1,007,090	+		PP_0867	0.83	-1.5
1,007,090	+		PP_0867	0.83	-0.5
1,007,090	+		PP_0867	0.83	+0.1
1,007,090	+		PP_0867	0.83	+1.4
1,007,090	+		PP_0867	0.83	-2.0
1,007,091	-		PP_0867	0.83	+0.6
1,007,091	-		PP_0867	0.83	+0.1
1,007,136	-		PP_0867	0.85	-2.7
1,007,136	-		PP_0867	0.85	+1.7
1,007,136	-		PP_0867	0.85	+2.2
1,007,176	+		PP_0867	0.87	-1.0
1,007,177	-		PP_0867	0.87	+1.0
1,007,204	+		PP_0867	0.88	-2.2
1,007,204	+		PP_0867	0.88	+1.0
1,007,204	+		PP_0867	0.88	+1.9
1,007,205	-		PP_0867	0.88	+0.6
1,007,271	-				+1.7
1,007,271	-				+0.9
1,007,414	+				+0.8
1,007,414	+				-1.4
1,007,414	+				+0.7
1,007,415	-				+1.7
1,007,450	+				-0.8
1,007,450	+				-2.0
1,007,450	+				+0.8
1,007,451	-				+0.5
1,007,451	-				-0.1
1,007,451	-				+3.7
1,007,474	+				-1.2
1,007,475	-				-2.1
1,007,546	-				+1.2
1,007,546	-				-1.9
1,007,558	-				+0.2
1,007,592	-				-2.7
1,007,592	-				+1.2
1,007,622	+				-0.2
1,007,661	-				+0.7
1,007,745	-		PP_0868	0.13	+2.5
1,007,745	-		PP_0868	0.13	-0.3
1,007,745	-		PP_0868	0.13	+1.3
1,007,858	+		PP_0868	0.23	+1.4
1,007,858	+		PP_0868	0.23	+0.5
1,008,170	-		PP_0868	0.50	-0.9
1,008,353	+		PP_0868	0.66	-0.6
1,008,447	+		PP_0868	0.74	+0.7
1,008,448	-		PP_0868	0.74	+1.6
1,008,448	-		PP_0868	0.74	+0.3
1,008,448	-		PP_0868	0.74	-1.0
1,008,500	+		PP_0868	0.79	-0.9