Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0836 and PP_0837 are separated by 118 nucleotides PP_0837 and PP_0838 are separated by 168 nucleotides
PP_0836: PP_0836 - Sec translocation complex subunit SecF, at 973,582 to 974,490
_0836
PP_0837: PP_0837 - putative regulator of flagellation, at 974,609 to 975,151
_0837
PP_0838: PP_0838 - inositol monophosphatase / glycerol-2-phosphatase, at 975,320 to 976,138
_0838
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 974.488 kb on + strand at 974.591 kb on + strand at 974.592 kb on - strand at 974.615 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.656 kb on - strand at 974.681 kb on + strand, within PP_0837 at 974.681 kb on + strand, within PP_0837 at 974.682 kb on - strand, within PP_0837 at 974.682 kb on - strand, within PP_0837 at 974.827 kb on + strand, within PP_0837 at 974.863 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.968 kb on + strand, within PP_0837 at 974.972 kb on + strand, within PP_0837 at 974.972 kb on + strand, within PP_0837 at 974.973 kb on - strand, within PP_0837 at 974.973 kb on - strand, within PP_0837 at 975.044 kb on + strand, within PP_0837 at 975.045 kb on - strand, within PP_0837 at 975.045 kb on - strand, within PP_0837 at 975.063 kb on + strand, within PP_0837 at 975.064 kb on - strand, within PP_0837 at 975.195 kb on + strand at 975.217 kb on + strand at 975.217 kb on + strand at 975.217 kb on + strand at 975.218 kb on - strand at 975.247 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 974,488 + -0.5 974,591 + +2.7 974,592 - -0.4 974,615 - -1.3 974,656 - +1.9 974,656 - -2.5 974,656 - -3.0 974,681 + PP_0837 0.13 +0.7 974,681 + PP_0837 0.13 +0.8 974,682 - PP_0837 0.13 +1.5 974,682 - PP_0837 0.13 -2.3 974,827 + PP_0837 0.40 -0.3 974,863 + PP_0837 0.47 -0.3 974,968 + PP_0837 0.66 -0.5 974,968 + PP_0837 0.66 -1.6 974,968 + PP_0837 0.66 +0.9 974,972 + PP_0837 0.67 +0.3 974,972 + PP_0837 0.67 +2.5 974,973 - PP_0837 0.67 +3.4 974,973 - PP_0837 0.67 +2.2 975,044 + PP_0837 0.80 -0.4 975,045 - PP_0837 0.80 -2.5 975,045 - PP_0837 0.80 +0.2 975,063 + PP_0837 0.84 +1.5 975,064 - PP_0837 0.84 -1.3 975,195 + +2.2 975,217 + +0.6 975,217 + -0.1 975,217 + +1.6 975,218 - -1.0 975,247 + +2.2
Or see this region's nucleotide sequence