Strain Fitness in Pseudomonas putida KT2440 around PP_0760

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0759 and PP_0760 are separated by 45 nucleotidesPP_0760 and PP_0761 are separated by 268 nucleotides PP_0759: PP_0759 - conserved exported protein of unknown function, at 874,422 to 875,261 _0759 PP_0760: PP_0760 - conserved membrane protein of unknown function, at 875,307 to 875,891 _0760 PP_0761: PP_0761 - Ribosomal RNA small subunit methyltransferase C, at 876,160 to 877,158 _0761 Position (kb) 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 874.326 kb on + strandat 874.326 kb on + strandat 874.327 kb on - strandat 874.385 kb on - strandat 874.410 kb on - strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.512 kb on - strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.606 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.902 kb on - strand, within PP_0759at 874.926 kb on + strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.172 kb on - strand, within PP_0759at 875.238 kb on + strandat 875.238 kb on + strandat 875.239 kb on - strandat 875.239 kb on - strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.260 kb on - strandat 875.309 kb on - strandat 875.341 kb on + strandat 875.341 kb on + strandat 875.463 kb on - strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.861 kb on + strandat 875.923 kb on + strandat 875.924 kb on - strandat 875.924 kb on - strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.968 kb on + strandat 875.968 kb on + strandat 875.969 kb on - strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.071 kb on - strandat 876.100 kb on + strandat 876.101 kb on - strandat 876.101 kb on - strandat 876.129 kb on + strandat 876.179 kb on + strandat 876.179 kb on + strandat 876.180 kb on - strandat 876.338 kb on + strand, within PP_0761at 876.346 kb on - strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.380 kb on - strand, within PP_0761at 876.381 kb on + strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.621 kb on + strand, within PP_0761at 876.621 kb on + strand, within PP_0761at 876.650 kb on - strand, within PP_0761at 876.863 kb on + strand, within PP_0761at 876.864 kb on - strand, within PP_0761

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
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874,326 + +0.7
874,326 + -1.9
874,327 - -0.1
874,385 - +1.8
874,410 - +0.2
874,448 + +0.9
874,448 + -0.6
874,448 + -0.8
874,449 - -0.2
874,449 - +3.5
874,449 - -0.2
874,449 - -0.1
874,449 - -0.1
874,511 + PP_0759 0.11 -0.1
874,511 + PP_0759 0.11 -0.1
874,511 + PP_0759 0.11 -2.3
874,512 - PP_0759 0.11 -0.5
874,551 + PP_0759 0.15 +1.2
874,551 + PP_0759 0.15 +0.3
874,551 + PP_0759 0.15 -0.8
874,552 - PP_0759 0.15 +1.8
874,552 - PP_0759 0.15 -0.4
874,552 - PP_0759 0.15 -2.0
874,552 - PP_0759 0.15 +0.2
874,552 - PP_0759 0.15 +3.8
874,552 - PP_0759 0.15 -0.6
874,552 - PP_0759 0.15 -0.4
874,593 + PP_0759 0.20 -0.8
874,593 + PP_0759 0.20 -1.5
874,594 - PP_0759 0.20 -0.6
874,594 - PP_0759 0.20 -2.2
874,606 - PP_0759 0.22 +0.2
874,813 - PP_0759 0.47 -1.7
874,813 - PP_0759 0.47 -1.1
874,902 - PP_0759 0.57 +0.4
874,926 + PP_0759 0.60 -0.1
874,927 - PP_0759 0.60 +0.0
874,927 - PP_0759 0.60 -0.4
874,927 - PP_0759 0.60 -1.3
875,014 - PP_0759 0.70 +2.0
875,014 - PP_0759 0.70 -0.8
875,014 - PP_0759 0.70 +0.5
875,014 - PP_0759 0.70 -1.9
875,014 - PP_0759 0.70 +0.8
875,172 - PP_0759 0.89 +0.2
875,238 + -0.3
875,238 + -0.2
875,239 - +0.3
875,239 - +1.3
875,259 + +0.1
875,259 + -2.1
875,259 + -0.9
875,259 + -1.1
875,260 - +3.6
875,309 - -0.3
875,341 + -0.8
875,341 + -1.9
875,463 - PP_0760 0.27 -3.4
875,483 + PP_0760 0.30 -3.3
875,483 + PP_0760 0.30 -2.5
875,484 - PP_0760 0.30 -2.1
875,484 - PP_0760 0.30 -1.6
875,861 + -2.1
875,923 + -3.0
875,924 - -1.6
875,924 - -0.2
875,932 + -1.8
875,932 + -2.5
875,932 + -1.8
875,932 + -2.1
875,932 + -1.1
875,933 - +0.5
875,933 - -0.7
875,933 - +0.8
875,933 - +0.8
875,933 - -0.8
875,933 - -3.0
875,933 - -1.3
875,968 + -2.6
875,968 + -1.3
875,969 - -0.3
876,058 + -3.4
876,058 + -2.5
876,058 + -2.7
876,058 + -2.1
876,058 + -0.9
876,058 + -1.5
876,058 + -1.3
876,058 + -1.1
876,059 - +0.3
876,059 - +1.3
876,059 - +0.2
876,059 - -0.9
876,059 - +1.9
876,071 - +2.0
876,100 + -2.2
876,101 - +1.4
876,101 - -0.3
876,129 + -1.3
876,179 + +0.3
876,179 + -1.8
876,180 - +0.8
876,338 + PP_0761 0.18 +0.3
876,346 - PP_0761 0.19 +1.6
876,379 + PP_0761 0.22 +0.1
876,379 + PP_0761 0.22 +0.0
876,379 + PP_0761 0.22 -2.5
876,379 + PP_0761 0.22 +2.7
876,380 - PP_0761 0.22 +1.4
876,381 + PP_0761 0.22 -0.8
876,382 - PP_0761 0.22 -0.5
876,382 - PP_0761 0.22 +1.1
876,382 - PP_0761 0.22 -0.5
876,621 + PP_0761 0.46 -1.0
876,621 + PP_0761 0.46 -1.6
876,650 - PP_0761 0.49 -0.2
876,863 + PP_0761 0.70 -0.9
876,864 - PP_0761 0.70 -0.9

Or see this region's nucleotide sequence