Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0662 and PP_0663 overlap by 4 nucleotides PP_0663 and PP_0664 are separated by 198 nucleotides
PP_0662: PP_0662 - putative Threonine synthase, at 770,317 to 771,705
_0662
PP_0663: PP_0663 - Transcriptional regulator, AsnC family, at 771,702 to 772,139
_0663
PP_0664: PP_0664 - homoserine dehydrogenase, at 772,338 to 773,381
_0664
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 770.805 kb on - strand, within PP_0662 at 770.805 kb on - strand, within PP_0662 at 770.806 kb on + strand, within PP_0662 at 770.807 kb on - strand, within PP_0662 at 770.807 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.014 kb on - strand, within PP_0662 at 771.094 kb on + strand, within PP_0662 at 771.094 kb on + strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.095 kb on - strand, within PP_0662 at 771.196 kb on + strand, within PP_0662 at 771.283 kb on + strand, within PP_0662 at 771.283 kb on + strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.284 kb on - strand, within PP_0662 at 771.394 kb on + strand, within PP_0662 at 771.395 kb on - strand, within PP_0662 at 771.461 kb on + strand, within PP_0662 at 771.485 kb on + strand, within PP_0662 at 771.486 kb on - strand, within PP_0662 at 771.863 kb on + strand, within PP_0663 at 771.863 kb on + strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.864 kb on - strand, within PP_0663 at 771.924 kb on + strand, within PP_0663 at 771.924 kb on + strand, within PP_0663 at 771.931 kb on - strand, within PP_0663 at 772.159 kb on + strand at 772.249 kb on + strand at 772.250 kb on - strand at 772.254 kb on - strand at 772.254 kb on - strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.293 kb on + strand at 772.294 kb on - strand at 772.298 kb on + strand at 772.299 kb on - strand at 772.299 kb on - strand at 772.788 kb on + strand, within PP_0664 at 772.827 kb on - strand, within PP_0664 at 772.862 kb on - strand, within PP_0664 at 772.886 kb on + strand, within PP_0664 at 772.886 kb on + strand, within PP_0664 at 772.887 kb on - strand, within PP_0664 at 772.892 kb on + strand, within PP_0664 at 772.892 kb on + strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.893 kb on - strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.896 kb on + strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 772.897 kb on - strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.008 kb on + strand, within PP_0664 at 773.009 kb on - strand, within PP_0664 at 773.009 kb on - strand, within PP_0664 at 773.009 kb on - strand, within PP_0664
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 770,805 - PP_0662 0.35 -2.1 770,805 - PP_0662 0.35 -1.7 770,806 + PP_0662 0.35 -2.4 770,807 - PP_0662 0.35 +0.4 770,807 - PP_0662 0.35 -1.4 771,014 - PP_0662 0.50 +0.7 771,014 - PP_0662 0.50 -0.1 771,014 - PP_0662 0.50 +1.1 771,014 - PP_0662 0.50 -2.2 771,014 - PP_0662 0.50 -1.1 771,094 + PP_0662 0.56 -1.1 771,094 + PP_0662 0.56 -1.7 771,095 - PP_0662 0.56 +1.2 771,095 - PP_0662 0.56 +0.6 771,095 - PP_0662 0.56 +0.5 771,196 + PP_0662 0.63 +0.2 771,283 + PP_0662 0.70 -0.3 771,283 + PP_0662 0.70 +2.2 771,284 - PP_0662 0.70 -1.2 771,284 - PP_0662 0.70 -0.0 771,284 - PP_0662 0.70 +0.2 771,394 + PP_0662 0.78 +0.9 771,395 - PP_0662 0.78 +1.8 771,461 + PP_0662 0.82 +0.2 771,485 + PP_0662 0.84 +2.4 771,486 - PP_0662 0.84 -2.1 771,863 + PP_0663 0.37 -1.7 771,863 + PP_0663 0.37 -2.9 771,864 - PP_0663 0.37 -1.4 771,864 - PP_0663 0.37 -2.0 771,864 - PP_0663 0.37 -1.1 771,924 + PP_0663 0.51 -0.3 771,924 + PP_0663 0.51 -0.2 771,931 - PP_0663 0.52 -0.8 772,159 + -0.4 772,249 + -0.9 772,250 - +1.1 772,254 - -0.8 772,254 - +0.6 772,293 + -0.9 772,293 + +0.1 772,293 + -2.9 772,293 + +0.1 772,293 + -0.6 772,293 + -0.7 772,294 - -1.0 772,298 + -2.2 772,299 - +2.0 772,299 - -0.8 772,788 + PP_0664 0.43 +0.2 772,827 - PP_0664 0.47 -0.3 772,862 - PP_0664 0.50 +0.8 772,886 + PP_0664 0.52 +0.1 772,886 + PP_0664 0.52 -0.7 772,887 - PP_0664 0.53 -1.9 772,892 + PP_0664 0.53 +0.0 772,892 + PP_0664 0.53 +0.6 772,893 - PP_0664 0.53 +1.7 772,893 - PP_0664 0.53 -2.4 772,893 - PP_0664 0.53 -2.3 772,896 + PP_0664 0.53 +1.0 772,896 + PP_0664 0.53 -2.2 772,896 + PP_0664 0.53 -0.6 772,896 + PP_0664 0.53 -2.7 772,896 + PP_0664 0.53 -0.8 772,896 + PP_0664 0.53 -1.3 772,897 - PP_0664 0.54 -0.7 772,897 - PP_0664 0.54 -0.4 772,897 - PP_0664 0.54 +0.2 772,897 - PP_0664 0.54 -0.8 773,008 + PP_0664 0.64 -2.1 773,008 + PP_0664 0.64 -1.8 773,008 + PP_0664 0.64 -1.8 773,009 - PP_0664 0.64 -1.5 773,009 - PP_0664 0.64 -0.8 773,009 - PP_0664 0.64 +0.1
Or see this region's nucleotide sequence