Strain Fitness in Pseudomonas putida KT2440 around PP_0091

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0088 and PP_0089 are separated by 152 nucleotidesPP_0089 and PP_0090 are separated by 12 nucleotidesPP_0090 and PP_0091 are separated by 35 nucleotidesPP_0091 and PP_0092 are separated by 55 nucleotidesPP_0092 and PP_0093 are separated by 85 nucleotides PP_0088: PP_0088 - putative alkanal monooxygenase, at 95,680 to 96,684 _0088 PP_0089: PP_0089 - stress-induced peroxiredoxin, lipoyl-dependent peroxidase, at 96,837 to 97,262 _0089 PP_0090: PP_0090 - conserved exported protein of unknown function, at 97,275 to 97,571 _0090 PP_0091: PP_0091 - putative lipoprotein, at 97,607 to 98,020 _0091 PP_0092: PP_0092 - putative lipoprotein, at 98,076 to 98,489 _0092 PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 Position (kb) 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 96.730 kb on - strandat 96.765 kb on + strandat 96.765 kb on + strandat 96.765 kb on + strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.766 kb on - strandat 96.806 kb on + strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.811 kb on - strandat 96.899 kb on + strand, within PP_0089at 96.930 kb on + strand, within PP_0089at 97.049 kb on + strand, within PP_0089at 97.049 kb on + strand, within PP_0089at 97.050 kb on - strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.147 kb on + strand, within PP_0089at 97.290 kb on - strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.294 kb on + strandat 97.295 kb on - strandat 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.348 kb on + strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.349 kb on - strand, within PP_0090at 97.352 kb on + strand, within PP_0090at 97.353 kb on - strand, within PP_0090at 97.551 kb on + strandat 97.551 kb on + strandat 97.552 kb on - strandat 97.552 kb on - strandat 97.626 kb on + strandat 97.630 kb on + strandat 97.631 kb on - strandat 97.665 kb on + strand, within PP_0091at 97.665 kb on + strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.666 kb on - strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.667 kb on + strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.668 kb on - strand, within PP_0091at 97.797 kb on + strand, within PP_0091at 97.807 kb on - strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.923 kb on + strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.924 kb on - strand, within PP_0091at 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.987 kb on + strandat 97.988 kb on - strandat 97.988 kb on - strandat 97.988 kb on - strandat 98.049 kb on + strandat 98.049 kb on + strandat 98.058 kb on + strandat 98.058 kb on + strandat 98.059 kb on - strandat 98.142 kb on + strandat 98.261 kb on + strand, within PP_0092at 98.287 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.381 kb on + strand, within PP_0092at 98.382 kb on - strand, within PP_0092at 98.479 kb on - strandat 98.479 kb on - strandat 98.513 kb on + strandat 98.514 kb on - strandat 98.514 kb on - strandat 98.574 kb on + strandat 98.671 kb on + strandat 98.672 kb on - strandat 98.672 kb on - strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.674 kb on + strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.675 kb on - strandat 98.726 kb on + strand, within PP_0093at 98.726 kb on + strand, within PP_0093at 98.727 kb on - strand, within PP_0093at 98.752 kb on - strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.851 kb on + strand, within PP_0093at 98.852 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.873 kb on - strand, within PP_0093at 98.956 kb on + strand, within PP_0093at 98.966 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093at 98.969 kb on - strand, within PP_0093

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
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96,730 - -2.0
96,765 + -1.2
96,765 + -0.7
96,765 + -0.7
96,766 - -0.7
96,766 - -0.9
96,766 - -0.3
96,766 - +1.7
96,766 - -0.9
96,766 - -3.4
96,806 + -3.3
96,811 - +0.2
96,811 - +0.5
96,811 - -2.9
96,811 - +0.1
96,811 - +5.2
96,811 - +0.5
96,811 - +2.5
96,899 + PP_0089 0.15 -1.5
96,930 + PP_0089 0.22 +3.6
97,049 + PP_0089 0.50 -2.3
97,049 + PP_0089 0.50 -0.3
97,050 - PP_0089 0.50 +0.2
97,147 + PP_0089 0.73 -1.1
97,147 + PP_0089 0.73 -0.6
97,147 + PP_0089 0.73 -0.3
97,147 + PP_0089 0.73 +0.7
97,290 - +1.5
97,294 + -1.1
97,294 + -0.7
97,294 + -1.6
97,295 - +1.7
97,348 + PP_0090 0.25 -0.8
97,348 + PP_0090 0.25 +0.4
97,348 + PP_0090 0.25 -1.7
97,349 - PP_0090 0.25 +1.4
97,349 - PP_0090 0.25 +0.3
97,349 - PP_0090 0.25 +0.5
97,349 - PP_0090 0.25 -1.5
97,352 + PP_0090 0.26 -1.9
97,353 - PP_0090 0.26 +1.3
97,551 + -2.5
97,551 + -0.3
97,552 - -0.2
97,552 - -1.5
97,626 + -0.3
97,630 + -0.2
97,631 - -1.4
97,665 + PP_0091 0.14 -0.8
97,665 + PP_0091 0.14 -1.6
97,666 - PP_0091 0.14 -1.2
97,666 - PP_0091 0.14 -1.1
97,666 - PP_0091 0.14 +1.2
97,667 + PP_0091 0.14 -1.5
97,667 + PP_0091 0.14 -1.3
97,667 + PP_0091 0.14 +0.6
97,667 + PP_0091 0.14 -0.6
97,667 + PP_0091 0.14 +2.5
97,668 - PP_0091 0.15 +2.7
97,668 - PP_0091 0.15 +1.6
97,668 - PP_0091 0.15 -0.6
97,668 - PP_0091 0.15 +2.0
97,668 - PP_0091 0.15 -0.2
97,668 - PP_0091 0.15 +0.2
97,668 - PP_0091 0.15 +1.6
97,668 - PP_0091 0.15 +0.1
97,797 + PP_0091 0.46 -2.5
97,807 - PP_0091 0.48 +1.7
97,923 + PP_0091 0.76 +3.2
97,923 + PP_0091 0.76 +1.0
97,924 - PP_0091 0.77 +0.3
97,924 - PP_0091 0.77 -0.5
97,987 + -0.4
97,987 + -0.2
97,987 + -0.9
97,987 + -0.4
97,988 - -1.7
97,988 - +0.3
97,988 - -3.9
98,049 + +1.0
98,049 + +1.3
98,058 + +0.3
98,058 + -0.5
98,059 - +0.3
98,142 + +0.8
98,261 + PP_0092 0.45 +1.5
98,287 + PP_0092 0.51 -0.1
98,381 + PP_0092 0.74 +3.0
98,381 + PP_0092 0.74 -1.6
98,381 + PP_0092 0.74 -2.5
98,382 - PP_0092 0.74 -1.7
98,479 - +1.1
98,479 - +1.0
98,513 + -2.6
98,514 - +2.0
98,514 - +0.7
98,574 + -0.8
98,671 + +0.2
98,672 - +1.0
98,672 - -1.7
98,674 + -0.1
98,674 + -1.9
98,674 + -0.5
98,674 + -0.3
98,675 - -2.0
98,675 - +0.0
98,675 - -2.3
98,726 + PP_0093 0.14 -1.8
98,726 + PP_0093 0.14 +1.2
98,727 - PP_0093 0.14 +0.6
98,752 - PP_0093 0.16 +0.6
98,851 + PP_0093 0.26 -0.8
98,851 + PP_0093 0.26 +1.6
98,852 - PP_0093 0.26 -0.5
98,873 - PP_0093 0.28 -1.2
98,873 - PP_0093 0.28 +1.3
98,956 + PP_0093 0.35 -1.6
98,966 - PP_0093 0.36 -2.2
98,969 - PP_0093 0.37 -1.6
98,969 - PP_0093 0.37 +0.8
98,969 - PP_0093 0.37 -2.0

Or see this region's nucleotide sequence