Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00485 and PS417_00490 are separated by 1 nucleotides PS417_00490 and PS417_00495 overlap by 4 nucleotides PS417_00495 and PS417_00500 are separated by 54 nucleotides
PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985
_00485
PS417_00490: PS417_00490 - iron ABC transporter ATP-binding protein, at 96,987 to 97,790
_00490
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
PS417_00500: PS417_00500 - membrane protein, at 98,990 to 100,021
_00500
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.867 kb on + strand, within PS417_00485 at 96.990 kb on + strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.991 kb on - strand at 96.999 kb on + strand at 97.150 kb on + strand, within PS417_00490 at 97.151 kb on - strand, within PS417_00490 at 97.354 kb on + strand, within PS417_00490 at 97.355 kb on - strand, within PS417_00490 at 97.623 kb on - strand, within PS417_00490 at 97.684 kb on + strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.685 kb on - strand, within PS417_00490 at 97.779 kb on + strand at 97.780 kb on - strand at 98.045 kb on + strand, within PS417_00495 at 98.142 kb on - strand, within PS417_00495 at 98.397 kb on - strand, within PS417_00495 at 98.766 kb on - strand, within PS417_00495 at 98.799 kb on + strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.867 kb on - strand at 98.936 kb on - strand at 98.969 kb on + strand at 98.969 kb on + strand at 98.973 kb on + strand at 98.973 kb on + strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.976 kb on + strand at 98.977 kb on - strand at 98.991 kb on + strand at 98.992 kb on - strand at 98.992 kb on - strand at 99.158 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.631 kb on - strand, within PS417_00500 at 99.634 kb on - strand, within PS417_00500
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 96,867 + PS417_00485 0.87 +1.0 96,990 + -0.3 96,991 - +0.4 96,991 - -1.3 96,991 - -0.9 96,999 + +0.7 97,150 + PS417_00490 0.20 +1.5 97,151 - PS417_00490 0.20 +0.0 97,354 + PS417_00490 0.46 -0.4 97,355 - PS417_00490 0.46 -0.0 97,623 - PS417_00490 0.79 -0.8 97,684 + PS417_00490 0.87 -0.0 97,685 - PS417_00490 0.87 +1.0 97,685 - PS417_00490 0.87 +0.2 97,685 - PS417_00490 0.87 +0.2 97,685 - PS417_00490 0.87 -0.4 97,779 + +1.2 97,780 - +0.2 98,045 + PS417_00495 0.22 -0.9 98,142 - PS417_00495 0.31 -2.8 98,397 - PS417_00495 0.53 -1.1 98,766 - PS417_00495 0.85 -0.1 98,799 + PS417_00495 0.88 -2.0 98,800 - PS417_00495 0.88 -0.8 98,800 - PS417_00495 0.88 -0.1 98,867 - -1.8 98,936 - +0.0 98,969 + +0.7 98,969 + -0.0 98,973 + -1.2 98,973 + -1.1 98,974 - +0.2 98,974 - -1.1 98,974 - -0.2 98,976 + +2.4 98,977 - +2.7 98,991 + +0.3 98,992 - +2.7 98,992 - +0.1 99,158 - PS417_00500 0.16 -0.1 99,208 - PS417_00500 0.21 -0.2 99,208 - PS417_00500 0.21 -0.5 99,517 - PS417_00500 0.51 -0.1 99,517 - PS417_00500 0.51 -0.2 99,517 - PS417_00500 0.51 -0.1 99,631 - PS417_00500 0.62 +0.7 99,634 - PS417_00500 0.62 -1.2
Or see this region's nucleotide sequence