Strain Fitness in Pseudomonas simiae WCS417 around PS417_00470

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
91,714	+				+0.2
91,714	+		PS417_00465	0.50	-0.4
91,714	+				-0.3
91,715	-		PS417_00465	0.50	-2.6
91,715	-		PS417_00465	0.50	+0.5
91,801	+		PS417_00465	0.69	-1.1
91,801	+		PS417_00465	0.69	-1.0
91,802	-		PS417_00465	0.69	-1.7
91,843	-		PS417_00465	0.78	-0.1
91,935	+				-1.1
91,936	-				-1.2
91,936	-				+0.5
91,942	+				-3.2
91,942	+				+1.0
91,945	+				-0.7
91,945	+				+0.4
91,945	+				+1.7
91,945	+				-0.8
91,945	+				+0.5
91,946	-				+0.7
91,946	-				+0.1
91,946	-				-0.9
91,946	-				+1.8
91,946	-				-0.1
92,090	+				-1.0
92,090	+				-1.1
92,185	+				-0.0
92,207	+				+0.2
92,207	+				+0.6
92,207	+				+0.7
92,207	+				+0.1
92,208	-				-0.1
92,208	-				-0.8
92,254	+				-0.4
92,254	+				+0.3
92,258	+				+1.1
92,259	-				-0.6
92,279	+				+0.0
92,279	+				-0.2
92,280	-				+0.8
92,531	+				-0.3
92,531	+				+0.2
92,557	+				+0.2
92,648	+				-0.3
92,663	+				+1.5
92,663	+				+1.2
92,663	+				-1.3
92,669	+				-0.6
92,693	-				+0.7
92,813	+		PS417_00470	0.10	-1.2
92,814	-		PS417_00470	0.10	-2.3
92,814	-		PS417_00470	0.10	-1.5
92,935	-		PS417_00470	0.19	-1.5
93,020	+		PS417_00470	0.26	+0.7
93,049	-		PS417_00470	0.28	-1.0
93,122	+		PS417_00470	0.33	-0.3
93,289	-		PS417_00470	0.46	-1.1
93,495	+		PS417_00470	0.61	+0.0
93,628	-		PS417_00470	0.71	+0.7
93,628	-		PS417_00470	0.71	+0.1
93,663	+		PS417_00470	0.74	+1.4
93,663	+		PS417_00470	0.74	+2.5
93,664	-		PS417_00470	0.74	-1.6
93,664	-		PS417_00470	0.74	-1.1
93,731	+		PS417_00470	0.79	-0.6
93,732	-		PS417_00470	0.79	-0.6
93,915	+				+0.2
93,915	+				-0.6
93,915	+				-0.8
93,915	+				+0.2
93,915	+				+1.7
93,916	-				-2.5
93,916	-				-0.6
93,916	-				+0.2
94,072	+				-0.5
94,725	-		PS417_00475	0.50	+0.2
94,725	-		PS417_00475	0.50	+1.7
94,886	+		PS417_00475	0.63	+1.0
94,909	+		PS417_00475	0.65	+0.6