Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00425 and PS417_00430 are separated by 10 nucleotides PS417_00430 and PS417_00435 overlap by 4 nucleotides PS417_00435 and PS417_00440 are separated by 88 nucleotides PS417_00440 and PS417_00445 overlap by 4 nucleotides
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515
_00430
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
PS417_00440: PS417_00440 - N-acetylmuramoyl-L-alanine amidase, at 86,655 to 87,431
_00440
PS417_00445: PS417_00445 - histidine kinase, at 87,428 to 89,215
_00445
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 83.624 kb on + strand at 83.790 kb on + strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 84.189 kb on + strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.213 kb on + strand, within PS417_00430 at 84.214 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.371 kb on + strand, within PS417_00430 at 84.551 kb on - strand at 84.551 kb on - strand at 84.710 kb on - strand at 85.175 kb on - strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.524 kb on - strand, within PS417_00435 at 85.649 kb on + strand, within PS417_00435 at 85.730 kb on + strand, within PS417_00435 at 85.755 kb on + strand, within PS417_00435 at 85.756 kb on - strand, within PS417_00435 at 86.228 kb on + strand, within PS417_00435 at 86.275 kb on - strand, within PS417_00435 at 86.306 kb on - strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.522 kb on + strand at 86.522 kb on + strand at 86.523 kb on - strand at 86.523 kb on - strand at 86.564 kb on + strand at 86.641 kb on + strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.667 kb on + strand at 86.667 kb on + strand at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 87.016 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.190 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.447 kb on + strand at 87.447 kb on + strand at 87.447 kb on + strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 83,624 + +3.1 83,790 + PS417_00430 0.17 +0.2 83,791 - PS417_00430 0.18 -0.1 83,791 - PS417_00430 0.18 -0.1 83,791 - PS417_00430 0.18 +0.3 84,189 + PS417_00430 0.63 +0.1 84,190 - PS417_00430 0.63 -0.5 84,190 - PS417_00430 0.63 -0.1 84,190 - PS417_00430 0.63 -1.4 84,213 + PS417_00430 0.66 -0.3 84,214 - PS417_00430 0.66 -0.7 84,357 - PS417_00430 0.82 +0.6 84,357 - PS417_00430 0.82 +0.8 84,371 + PS417_00430 0.84 -1.1 84,551 - +0.2 84,551 - +0.9 84,710 - -0.2 85,175 - PS417_00435 0.32 +0.0 85,493 + PS417_00435 0.48 +0.5 85,493 + PS417_00435 0.48 -0.9 85,493 + PS417_00435 0.48 +0.3 85,494 - PS417_00435 0.48 -1.4 85,494 - PS417_00435 0.48 +0.2 85,494 - PS417_00435 0.48 +0.4 85,494 - PS417_00435 0.48 +0.4 85,494 - PS417_00435 0.48 +1.0 85,524 - PS417_00435 0.49 +2.4 85,649 + PS417_00435 0.55 -0.3 85,730 + PS417_00435 0.59 +1.2 85,755 + PS417_00435 0.60 +0.2 85,756 - PS417_00435 0.61 +2.7 86,228 + PS417_00435 0.84 +0.4 86,275 - PS417_00435 0.86 -2.0 86,306 - PS417_00435 0.87 +0.3 86,334 + PS417_00435 0.89 -2.4 86,334 + PS417_00435 0.89 +0.8 86,334 + PS417_00435 0.89 -0.2 86,334 + PS417_00435 0.89 +1.6 86,335 - PS417_00435 0.89 +0.4 86,335 - PS417_00435 0.89 -0.6 86,335 - PS417_00435 0.89 -0.6 86,522 + +0.2 86,522 + +0.3 86,523 - -0.6 86,523 - +0.1 86,564 + +0.1 86,641 + +0.2 86,642 - +1.0 86,642 - -0.1 86,642 - +0.2 86,667 + -0.1 86,667 + +0.4 86,874 + PS417_00440 0.28 +2.3 86,874 + PS417_00440 0.28 +0.7 86,874 + PS417_00440 0.28 -0.2 86,874 + PS417_00440 0.28 -0.4 86,875 - PS417_00440 0.28 -0.7 86,875 - PS417_00440 0.28 +1.4 87,016 - PS417_00440 0.46 -0.6 87,039 - PS417_00440 0.49 -0.8 87,039 - PS417_00440 0.49 -1.1 87,190 + PS417_00440 0.69 -0.1 87,231 + PS417_00440 0.74 -1.3 87,231 + PS417_00440 0.74 -0.6 87,232 - PS417_00440 0.74 -0.4 87,232 - PS417_00440 0.74 -0.4 87,447 + +0.2 87,447 + -0.2 87,447 + -0.2 87,448 - -0.3 87,448 - +0.7 87,448 - -1.4 87,448 - -0.3 87,478 - +0.0
Or see this region's nucleotide sequence