Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03975 and PS417_03980 are separated by 44 nucleotides PS417_03980 and PS417_03985 are separated by 99 nucleotides
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
PS417_03980: PS417_03980 - alkaline phosphatase, at 891,073 to 892,614
_03980
PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239
_03985
Position (kb) 891
892
893 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 890.193 kb on - strand, within PS417_03975 at 890.201 kb on + strand, within PS417_03975 at 890.289 kb on + strand, within PS417_03975 at 890.573 kb on + strand, within PS417_03975 at 890.672 kb on - strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.927 kb on + strand at 890.973 kb on - strand at 891.040 kb on - strand at 891.290 kb on + strand, within PS417_03980 at 891.559 kb on + strand, within PS417_03980 at 891.617 kb on - strand, within PS417_03980 at 891.676 kb on - strand, within PS417_03980 at 891.676 kb on - strand, within PS417_03980 at 891.733 kb on + strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.973 kb on + strand, within PS417_03980 at 891.974 kb on - strand, within PS417_03980 at 892.143 kb on + strand, within PS417_03980 at 892.158 kb on - strand at 892.172 kb on + strand, within PS417_03980 at 892.172 kb on + strand, within PS417_03980 at 892.296 kb on - strand, within PS417_03980 at 892.318 kb on + strand, within PS417_03980 at 892.336 kb on + strand, within PS417_03980 at 892.336 kb on + strand, within PS417_03980 at 892.529 kb on + strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.663 kb on + strand at 892.777 kb on + strand at 892.777 kb on + strand at 892.778 kb on - strand at 892.778 kb on - strand at 892.778 kb on - strand at 892.835 kb on + strand at 892.835 kb on + strand at 892.836 kb on - strand at 892.836 kb on - strand at 892.863 kb on + strand at 892.864 kb on - strand at 892.864 kb on - strand at 893.301 kb on - strand, within PS417_03985 at 893.564 kb on - strand, within PS417_03985
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 890,193 - PS417_03975 0.51 +0.5 890,201 + PS417_03975 0.52 +2.4 890,289 + PS417_03975 0.57 +0.6 890,573 + PS417_03975 0.73 +0.8 890,672 - PS417_03975 0.79 +0.0 890,846 + PS417_03975 0.89 +1.4 890,846 + PS417_03975 0.89 +1.3 890,846 + PS417_03975 0.89 +1.1 890,927 + -0.5 890,973 - +0.1 891,040 - +0.8 891,290 + PS417_03980 0.14 +0.0 891,559 + PS417_03980 0.32 -0.9 891,617 - PS417_03980 0.35 +0.5 891,676 - PS417_03980 0.39 -0.5 891,676 - PS417_03980 0.39 -0.9 891,733 + PS417_03980 0.43 -1.3 891,914 - PS417_03980 0.55 -1.2 891,914 - PS417_03980 0.55 -0.3 891,973 + PS417_03980 0.58 -0.7 891,974 - PS417_03980 0.58 +0.2 892,143 + PS417_03980 0.69 -0.8 892,158 - -0.3 892,172 + PS417_03980 0.71 -0.4 892,172 + PS417_03980 0.71 -0.1 892,296 - PS417_03980 0.79 -1.4 892,318 + PS417_03980 0.81 -0.7 892,336 + PS417_03980 0.82 +1.2 892,336 + PS417_03980 0.82 +0.1 892,529 + +0.0 892,530 - +0.1 892,530 - +0.4 892,530 - +0.5 892,530 - +0.1 892,530 - +0.8 892,663 + +0.1 892,777 + +0.6 892,777 + -0.2 892,778 - +0.4 892,778 - -0.4 892,778 - +0.5 892,835 + +0.9 892,835 + +0.2 892,836 - -1.8 892,836 - +0.1 892,863 + +0.0 892,864 - -4.0 892,864 - +1.3 893,301 - PS417_03985 0.23 +0.1 893,564 - PS417_03985 0.34 -0.9
Or see this region's nucleotide sequence