Strain Fitness in Pseudomonas simiae WCS417 around PS417_03865

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
867,512	-		PS417_03855	0.49	-0.2
867,512	-		PS417_03855	0.49	+0.0
867,512	-		PS417_03855	0.49	-0.8
867,512	-		PS417_03855	0.49	-0.2
867,975	-		PS417_03855	0.85	+1.2
868,041	+				-0.3
868,152	+				+0.1
868,152	+				-2.1
868,153	-				-0.8
868,153	-				-0.2
868,155	+				-1.8
868,155	+				-0.0
868,156	-				+0.9
868,156	-				+0.3
868,174	-				+0.9
868,205	+				-0.2
868,355	+				+0.3
868,401	+				+0.5
868,417	+				+0.6
868,483	+				-0.1
868,483	+				-0.3
868,484	-				+0.9
868,484	-				+0.4
868,595	+		PS417_03865	0.22	+2.3
868,700	+		PS417_03865	0.39	+0.1
868,700	+		PS417_03865	0.39	+0.7
868,701	-		PS417_03865	0.39	+1.5
868,701	-		PS417_03865	0.39	-0.2
868,704	+		PS417_03865	0.39	+1.5
868,704	+		PS417_03865	0.39	+1.2
869,069	+				+1.4
869,085	+				-0.3
869,085	+				-0.6
869,085	+				-1.6
869,085	+				-0.4
869,145	+				+0.1
869,200	-				+1.4
869,300	+		PS417_03870	0.24	-0.9
869,300	+		PS417_03870	0.24	+0.1
869,489	+		PS417_03870	0.64	+0.9
869,554	+		PS417_03870	0.78	-0.5
869,606	+		PS417_03870	0.89	+1.4
869,606	+		PS417_03870	0.89	-1.0
869,606	+		PS417_03870	0.89	+0.8
869,707	+				-3.6
869,707	+				-1.2
869,707	+				+0.6
869,707	+				+2.0
869,707	+				-2.9
869,720	+				-0.5
870,070	+		PS417_03875	0.60	-1.9
870,071	-		PS417_03875	0.61	-1.8
870,072	+		PS417_03875	0.61	-1.3