Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03555 and PS417_03560 are separated by 392 nucleotides PS417_03560 and PS417_03565 are separated by 21 nucleotides PS417_03565 and PS417_03570 are separated by 167 nucleotides
PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258
_03555
PS417_03560: PS417_03560 - GTP-binding protein, at 811,651 to 812,751
_03560
PS417_03565: PS417_03565 - peptidyl-tRNA hydrolase, at 812,773 to 813,357
_03565
PS417_03570: PS417_03570 - 50S ribosomal protein L25, at 813,525 to 814,121
_03570
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 810.688 kb on + strand, within PS417_03555 at 810.757 kb on - strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.906 kb on - strand at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.105 kb on + strand, within PS417_03555 at 811.106 kb on - strand, within PS417_03555 at 811.120 kb on + strand, within PS417_03555 at 811.121 kb on - strand, within PS417_03555 at 811.161 kb on - strand, within PS417_03555 at 811.298 kb on - strand at 811.437 kb on + strand at 811.922 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 810,688 + PS417_03555 0.38 +0.1 810,757 - PS417_03555 0.46 -0.0 810,905 + PS417_03555 0.62 +0.0 810,905 + PS417_03555 0.62 +1.3 810,906 - +0.7 810,939 + PS417_03555 0.65 -2.8 810,939 + PS417_03555 0.65 +0.2 810,939 + PS417_03555 0.65 -0.6 810,940 - PS417_03555 0.66 +0.5 810,940 - PS417_03555 0.66 +0.1 810,940 - PS417_03555 0.66 -0.4 810,940 - PS417_03555 0.66 -0.4 810,942 - PS417_03555 0.66 -0.7 810,942 - PS417_03555 0.66 +0.0 810,942 - PS417_03555 0.66 +0.8 811,099 - PS417_03555 0.83 +0.7 811,099 - PS417_03555 0.83 -0.4 811,105 + PS417_03555 0.83 +0.3 811,106 - PS417_03555 0.83 +0.5 811,120 + PS417_03555 0.85 -1.1 811,121 - PS417_03555 0.85 +0.2 811,161 - PS417_03555 0.89 -0.1 811,298 - -2.5 811,437 + +0.7 811,922 + PS417_03560 0.25 +0.7 812,135 + PS417_03560 0.44 +1.7 812,135 + PS417_03560 0.44 +0.7 812,135 + PS417_03560 0.44 -2.0
Or see this region's nucleotide sequence