Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03195 and PS417_03200 are separated by 137 nucleotides PS417_03200 and PS417_03205 are separated by 24 nucleotides
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
PS417_03200: PS417_03200 - ArsR family transcriptional regulator, at 731,953 to 732,642
_03200
PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620
_03205
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 731.024 kb on - strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.467 kb on + strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.606 kb on + strand, within PS417_03195 at 731.607 kb on - strand, within PS417_03195 at 731.813 kb on + strand at 731.863 kb on - strand at 731.902 kb on - strand at 731.903 kb on + strand at 731.904 kb on - strand at 731.904 kb on - strand at 731.916 kb on - strand at 732.288 kb on - strand, within PS417_03200 at 732.344 kb on - strand, within PS417_03200 at 732.471 kb on + strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand at 732.645 kb on + strand at 732.645 kb on + strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.669 kb on - strand at 732.677 kb on - strand at 732.773 kb on + strand, within PS417_03205 at 733.013 kb on + strand, within PS417_03205 at 733.014 kb on - strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.397 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.436 kb on + strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.437 kb on - strand, within PS417_03205 at 733.439 kb on + strand, within PS417_03205 at 733.440 kb on - strand, within PS417_03205 at 733.464 kb on + strand, within PS417_03205 at 733.476 kb on - strand, within PS417_03205
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 731,024 - PS417_03195 0.15 -0.5 731,465 + PS417_03195 0.62 +2.9 731,465 + PS417_03195 0.62 -0.6 731,465 + PS417_03195 0.62 -0.5 731,465 + PS417_03195 0.62 -0.1 731,465 + PS417_03195 0.62 -1.0 731,465 + PS417_03195 0.62 -1.2 731,465 + PS417_03195 0.62 +0.9 731,466 - PS417_03195 0.62 -0.4 731,466 - PS417_03195 0.62 +0.4 731,466 - PS417_03195 0.62 +0.1 731,466 - PS417_03195 0.62 -0.6 731,467 + PS417_03195 0.62 -0.5 731,468 - PS417_03195 0.62 -0.2 731,468 - PS417_03195 0.62 +0.0 731,468 - PS417_03195 0.62 -0.2 731,606 + PS417_03195 0.77 +0.7 731,607 - PS417_03195 0.77 -3.5 731,813 + -0.2 731,863 - -1.5 731,902 - -1.0 731,903 + -0.0 731,904 - +0.1 731,904 - +0.4 731,916 - -0.1 732,288 - PS417_03200 0.49 -0.1 732,344 - PS417_03200 0.57 -1.4 732,471 + PS417_03200 0.75 -0.8 732,472 - PS417_03200 0.75 -0.9 732,472 - PS417_03200 0.75 -1.1 732,472 - +0.7 732,645 + -0.6 732,645 + +0.3 732,646 - +0.5 732,646 - -1.7 732,646 - +1.7 732,669 - -1.0 732,677 - -0.0 732,773 + PS417_03205 0.11 -0.3 733,013 + PS417_03205 0.36 -0.3 733,014 - PS417_03205 0.36 +0.3 733,397 + PS417_03205 0.77 +2.2 733,397 + PS417_03205 0.77 +0.8 733,397 + PS417_03205 0.77 +1.7 733,436 + PS417_03205 0.81 -1.0 733,436 + PS417_03205 0.81 +0.8 733,436 + PS417_03205 0.81 -1.2 733,436 + PS417_03205 0.81 -1.3 733,436 + PS417_03205 0.81 -1.3 733,436 + PS417_03205 0.81 -1.0 733,436 + PS417_03205 0.81 -0.8 733,437 - PS417_03205 0.81 -0.3 733,437 - PS417_03205 0.81 -0.1 733,439 + PS417_03205 0.81 +0.0 733,440 - PS417_03205 0.81 +1.7 733,464 + PS417_03205 0.84 -0.3 733,476 - PS417_03205 0.85 +0.5
Or see this region's nucleotide sequence