Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02750 and PS417_02755 overlap by 4 nucleotides PS417_02755 and PS417_02760 are separated by 97 nucleotides PS417_02760 and PS417_02765 are separated by 71 nucleotides PS417_02765 and PS417_02770 are separated by 193 nucleotides
PS417_02750: PS417_02750 - alpha/beta hydrolase, at 626,389 to 627,279
_02750
PS417_02755: PS417_02755 - membrane protein, at 627,276 to 628,145
_02755
PS417_02760: PS417_02760 - AraC family transcriptional regulator, at 628,243 to 629,031
_02760
PS417_02765: PS417_02765 - phosphate starvation-inducible protein PsiF, at 629,103 to 629,405
_02765
PS417_02770: PS417_02770 - membrane protein, at 629,599 to 630,612
_02770
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 627.349 kb on + strand at 627.503 kb on - strand, within PS417_02755 at 627.503 kb on - strand, within PS417_02755 at 627.598 kb on + strand, within PS417_02755 at 627.598 kb on + strand, within PS417_02755 at 627.652 kb on + strand at 627.793 kb on + strand, within PS417_02755 at 627.794 kb on - strand, within PS417_02755 at 627.901 kb on + strand, within PS417_02755 at 627.916 kb on + strand, within PS417_02755 at 627.916 kb on + strand, within PS417_02755 at 627.948 kb on + strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 627.949 kb on - strand, within PS417_02755 at 628.014 kb on - strand, within PS417_02755 at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.138 kb on + strand at 628.139 kb on - strand at 628.203 kb on - strand at 628.205 kb on - strand at 628.242 kb on + strand at 628.243 kb on - strand at 628.259 kb on + strand at 628.260 kb on - strand at 628.260 kb on - strand at 628.297 kb on + strand at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.471 kb on + strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.472 kb on - strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.492 kb on + strand, within PS417_02760 at 628.493 kb on - strand, within PS417_02760 at 629.037 kb on + strand at 629.038 kb on - strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.051 kb on + strand at 629.052 kb on - strand at 629.183 kb on + strand, within PS417_02765 at 629.599 kb on - strand at 629.599 kb on - strand at 629.627 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.641 kb on + strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.642 kb on - strand at 629.822 kb on + strand, within PS417_02770 at 629.823 kb on - strand, within PS417_02770
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 627,349 + -0.3 627,503 - PS417_02755 0.26 +1.1 627,503 - PS417_02755 0.26 -0.1 627,598 + PS417_02755 0.37 -0.1 627,598 + PS417_02755 0.37 +0.2 627,652 + -1.5 627,793 + PS417_02755 0.59 +0.2 627,794 - PS417_02755 0.60 +0.4 627,901 + PS417_02755 0.72 +1.2 627,916 + PS417_02755 0.74 -0.1 627,916 + PS417_02755 0.74 +0.6 627,948 + PS417_02755 0.77 -0.7 627,949 - PS417_02755 0.77 +0.4 627,949 - PS417_02755 0.77 -0.3 627,949 - PS417_02755 0.77 -0.3 627,949 - PS417_02755 0.77 +0.4 628,014 - PS417_02755 0.85 +1.0 628,138 + -0.7 628,138 + +1.6 628,138 + -1.1 628,138 + -1.9 628,139 - -0.9 628,203 - +5.0 628,205 - -0.0 628,242 + +1.6 628,243 - -1.1 628,259 + -1.4 628,260 - -0.6 628,260 - +0.3 628,297 + +0.1 628,471 + PS417_02760 0.29 -2.1 628,471 + PS417_02760 0.29 -0.4 628,471 + PS417_02760 0.29 +0.0 628,471 + PS417_02760 0.29 -2.6 628,472 - PS417_02760 0.29 -1.2 628,472 - PS417_02760 0.29 -1.3 628,492 + PS417_02760 0.32 -0.3 628,492 + PS417_02760 0.32 -1.6 628,493 - PS417_02760 0.32 +0.1 629,037 + +0.7 629,038 - -0.4 629,051 + +2.3 629,051 + +0.8 629,051 + +0.2 629,052 - -1.8 629,183 + PS417_02765 0.26 -0.5 629,599 - +1.7 629,599 - +0.7 629,627 + +1.0 629,641 + +0.1 629,641 + -0.5 629,641 + -1.7 629,641 + +0.8 629,641 + +1.3 629,641 + +0.7 629,641 + -1.1 629,642 - +0.3 629,642 - +0.1 629,642 - +0.2 629,822 + PS417_02770 0.22 +0.4 629,823 - PS417_02770 0.22 -0.4
Or see this region's nucleotide sequence