Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27440 and PS417_27445 are separated by 208 nucleotides PS417_27445 and PS417_27450 overlap by 20 nucleotides PS417_27450 and PS417_27455 are separated by 116 nucleotides PS417_27455 and PS417_27460 are separated by 47 nucleotides
PS417_27440: PS417_27440 - delta-aminolevulinic acid dehydratase, at 5,922,586 to 5,923,599
_27440
PS417_27445: PS417_27445 - membrane protein, at 5,923,808 to 5,924,437
_27445
PS417_27450: PS417_27450 - membrane protein, at 5,924,418 to 5,925,653
_27450
PS417_27455: PS417_27455 - isoprenoid biosynthesis protein, at 5,925,770 to 5,926,435
_27455
PS417_27460: PS417_27460 - hypothetical protein, at 5,926,483 to 5,926,938
_27460
Position (kb) 5924
5925
5926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5923.505 kb on - strand at 5923.642 kb on - strand at 5923.642 kb on - strand at 5923.642 kb on - strand at 5923.643 kb on + strand at 5923.654 kb on + strand at 5923.654 kb on + strand at 5923.655 kb on - strand at 5923.655 kb on - strand at 5923.666 kb on - strand at 5923.717 kb on - strand at 5923.717 kb on - strand at 5923.747 kb on + strand at 5923.838 kb on + strand at 5923.961 kb on + strand, within PS417_27445 at 5923.962 kb on - strand, within PS417_27445 at 5923.962 kb on - strand, within PS417_27445 at 5923.962 kb on - strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.985 kb on + strand, within PS417_27445 at 5923.986 kb on - strand, within PS417_27445 at 5923.986 kb on - strand, within PS417_27445 at 5923.986 kb on - strand, within PS417_27445 at 5923.986 kb on - strand, within PS417_27445 at 5923.986 kb on - strand, within PS417_27445 at 5924.008 kb on + strand, within PS417_27445 at 5924.040 kb on + strand, within PS417_27445 at 5924.041 kb on - strand, within PS417_27445 at 5924.041 kb on - strand, within PS417_27445 at 5924.627 kb on + strand, within PS417_27450 at 5924.704 kb on + strand, within PS417_27450 at 5924.705 kb on - strand, within PS417_27450 at 5924.705 kb on - strand, within PS417_27450 at 5924.722 kb on + strand, within PS417_27450 at 5924.723 kb on - strand, within PS417_27450 at 5924.723 kb on - strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.746 kb on + strand, within PS417_27450 at 5924.747 kb on - strand, within PS417_27450 at 5924.747 kb on - strand, within PS417_27450 at 5924.747 kb on - strand, within PS417_27450 at 5924.747 kb on - strand, within PS417_27450 at 5924.760 kb on + strand, within PS417_27450 at 5924.760 kb on + strand at 5924.760 kb on + strand, within PS417_27450 at 5924.761 kb on - strand, within PS417_27450 at 5924.761 kb on - strand, within PS417_27450 at 5924.819 kb on - strand, within PS417_27450 at 5924.819 kb on - strand, within PS417_27450 at 5925.055 kb on + strand, within PS417_27450 at 5925.070 kb on + strand, within PS417_27450 at 5925.071 kb on - strand, within PS417_27450 at 5925.071 kb on - strand, within PS417_27450 at 5925.131 kb on - strand, within PS417_27450 at 5925.131 kb on - strand, within PS417_27450 at 5925.147 kb on + strand, within PS417_27450 at 5925.147 kb on + strand, within PS417_27450 at 5925.148 kb on - strand, within PS417_27450 at 5925.148 kb on - strand, within PS417_27450 at 5925.162 kb on + strand, within PS417_27450 at 5925.204 kb on - strand, within PS417_27450 at 5925.245 kb on - strand, within PS417_27450 at 5925.245 kb on - strand, within PS417_27450 at 5925.304 kb on + strand, within PS417_27450 at 5925.304 kb on + strand, within PS417_27450 at 5925.380 kb on - strand, within PS417_27450 at 5925.383 kb on - strand, within PS417_27450 at 5925.395 kb on - strand, within PS417_27450 at 5925.542 kb on + strand at 5925.543 kb on - strand at 5925.565 kb on + strand at 5925.604 kb on - strand at 5925.604 kb on - strand at 5925.668 kb on + strand at 5925.668 kb on + strand at 5925.668 kb on + strand at 5925.688 kb on + strand at 5925.688 kb on + strand at 5925.689 kb on - strand at 5925.689 kb on - strand at 5925.731 kb on + strand at 5925.743 kb on - strand at 5925.812 kb on + strand at 5925.812 kb on + strand at 5925.960 kb on + strand, within PS417_27455 at 5925.961 kb on - strand, within PS417_27455 at 5926.177 kb on + strand, within PS417_27455 at 5926.178 kb on - strand, within PS417_27455 at 5926.178 kb on - strand, within PS417_27455 at 5926.205 kb on + strand, within PS417_27455 at 5926.205 kb on + strand, within PS417_27455 at 5926.205 kb on + strand, within PS417_27455 at 5926.206 kb on - strand, within PS417_27455 at 5926.206 kb on - strand, within PS417_27455 at 5926.206 kb on - strand, within PS417_27455 at 5926.346 kb on + strand, within PS417_27455 at 5926.346 kb on + strand, within PS417_27455 at 5926.346 kb on + strand, within PS417_27455 at 5926.347 kb on - strand, within PS417_27455 at 5926.347 kb on - strand, within PS417_27455 at 5926.347 kb on - strand, within PS417_27455 at 5926.347 kb on - strand, within PS417_27455 at 5926.348 kb on + strand, within PS417_27455 at 5926.348 kb on + strand, within PS417_27455 at 5926.503 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,923,505 - -0.8 5,923,642 - +0.3 5,923,642 - -0.8 5,923,642 - -0.1 5,923,643 + -0.5 5,923,654 + +0.5 5,923,654 + +0.3 5,923,655 - -1.2 5,923,655 - +1.1 5,923,666 - +0.3 5,923,717 - +0.1 5,923,717 - +2.0 5,923,747 + -0.0 5,923,838 + +0.2 5,923,961 + PS417_27445 0.24 -1.1 5,923,962 - PS417_27445 0.24 +0.8 5,923,962 - PS417_27445 0.24 -0.6 5,923,962 - PS417_27445 0.24 +0.9 5,923,985 + PS417_27445 0.28 -0.6 5,923,985 + PS417_27445 0.28 +1.3 5,923,985 + PS417_27445 0.28 +1.1 5,923,985 + PS417_27445 0.28 -1.5 5,923,985 + PS417_27445 0.28 +0.3 5,923,985 + PS417_27445 0.28 +1.3 5,923,985 + PS417_27445 0.28 +0.7 5,923,986 - PS417_27445 0.28 -0.9 5,923,986 - PS417_27445 0.28 +0.9 5,923,986 - PS417_27445 0.28 +0.1 5,923,986 - PS417_27445 0.28 -2.0 5,923,986 - PS417_27445 0.28 +0.6 5,924,008 + PS417_27445 0.32 +3.1 5,924,040 + PS417_27445 0.37 +0.6 5,924,041 - PS417_27445 0.37 +1.9 5,924,041 - PS417_27445 0.37 +0.2 5,924,627 + PS417_27450 0.17 +0.9 5,924,704 + PS417_27450 0.23 -1.5 5,924,705 - PS417_27450 0.23 -0.4 5,924,705 - PS417_27450 0.23 -0.1 5,924,722 + PS417_27450 0.25 +0.3 5,924,723 - PS417_27450 0.25 +0.1 5,924,723 - PS417_27450 0.25 -0.1 5,924,746 + PS417_27450 0.27 -2.0 5,924,746 + PS417_27450 0.27 -0.6 5,924,746 + PS417_27450 0.27 +0.1 5,924,746 + PS417_27450 0.27 +0.1 5,924,746 + PS417_27450 0.27 -1.6 5,924,746 + PS417_27450 0.27 +0.3 5,924,747 - PS417_27450 0.27 -1.2 5,924,747 - PS417_27450 0.27 -0.4 5,924,747 - PS417_27450 0.27 +0.8 5,924,747 - PS417_27450 0.27 -0.1 5,924,760 + PS417_27450 0.28 -1.8 5,924,760 + -0.6 5,924,760 + PS417_27450 0.28 -1.1 5,924,761 - PS417_27450 0.28 -0.9 5,924,761 - PS417_27450 0.28 +0.2 5,924,819 - PS417_27450 0.32 -0.9 5,924,819 - PS417_27450 0.32 -0.2 5,925,055 + PS417_27450 0.52 -0.2 5,925,070 + PS417_27450 0.53 -0.1 5,925,071 - PS417_27450 0.53 +0.0 5,925,071 - PS417_27450 0.53 +0.1 5,925,131 - PS417_27450 0.58 -2.4 5,925,131 - PS417_27450 0.58 -1.0 5,925,147 + PS417_27450 0.59 -0.4 5,925,147 + PS417_27450 0.59 -0.2 5,925,148 - PS417_27450 0.59 -1.1 5,925,148 - PS417_27450 0.59 +1.3 5,925,162 + PS417_27450 0.60 +1.7 5,925,204 - PS417_27450 0.64 -0.1 5,925,245 - PS417_27450 0.67 -0.3 5,925,245 - PS417_27450 0.67 -0.9 5,925,304 + PS417_27450 0.72 -2.1 5,925,304 + PS417_27450 0.72 -0.1 5,925,380 - PS417_27450 0.78 +0.1 5,925,383 - PS417_27450 0.78 -3.3 5,925,395 - PS417_27450 0.79 +0.4 5,925,542 + +2.1 5,925,543 - +0.5 5,925,565 + +0.5 5,925,604 - +2.4 5,925,604 - +0.3 5,925,668 + +1.7 5,925,668 + +0.2 5,925,668 + +0.3 5,925,688 + +1.3 5,925,688 + +1.1 5,925,689 - +1.0 5,925,689 - -0.7 5,925,731 + +1.2 5,925,743 - -1.5 5,925,812 + +1.7 5,925,812 + -1.4 5,925,960 + PS417_27455 0.29 +0.1 5,925,961 - PS417_27455 0.29 -2.1 5,926,177 + PS417_27455 0.61 -0.1 5,926,178 - PS417_27455 0.61 +0.3 5,926,178 - PS417_27455 0.61 +1.7 5,926,205 + PS417_27455 0.65 -1.6 5,926,205 + PS417_27455 0.65 -1.3 5,926,205 + PS417_27455 0.65 +0.3 5,926,206 - PS417_27455 0.65 -0.9 5,926,206 - PS417_27455 0.65 +1.8 5,926,206 - PS417_27455 0.65 +0.0 5,926,346 + PS417_27455 0.86 -1.1 5,926,346 + PS417_27455 0.86 +0.1 5,926,346 + PS417_27455 0.86 +0.7 5,926,347 - PS417_27455 0.87 +0.1 5,926,347 - PS417_27455 0.87 -0.1 5,926,347 - PS417_27455 0.87 -0.2 5,926,347 - PS417_27455 0.87 -0.8 5,926,348 + PS417_27455 0.87 +0.9 5,926,348 + PS417_27455 0.87 -0.3 5,926,503 + -0.3
Or see this region's nucleotide sequence