Strain Fitness in Pseudomonas simiae WCS417 around PS417_27220

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,875,382	+		PS417_27210	0.24	-0.8
5,875,382	+		PS417_27210	0.24	-0.6
5,875,383	-		PS417_27210	0.24	-0.1
5,875,383	-		PS417_27210	0.24	-0.3
5,875,442	+		PS417_27210	0.37	+0.1
5,875,442	+		PS417_27210	0.37	-1.5
5,875,442	+				+0.1
5,875,442	+		PS417_27210	0.37	+2.0
5,875,443	-		PS417_27210	0.37	-2.6
5,875,443	-		PS417_27210	0.37	-0.6
5,875,742	+				-0.8
5,875,808	-				-0.5
5,875,889	+				-0.8
5,875,998	-		PS417_27215	0.38	-1.0
5,876,152	+		PS417_27215	0.84	-0.6
5,876,153	-		PS417_27215	0.84	+1.5
5,876,153	-		PS417_27215	0.84	-1.8
5,876,217	+				-0.2
5,876,217	+				+0.7
5,876,218	-				+0.9
5,876,218	-				+0.7
5,876,251	-				+0.8
5,876,262	+				-0.7
5,876,489	+		PS417_27220	0.12	-0.2
5,876,489	+		PS417_27220	0.12	+0.5
5,876,490	-		PS417_27220	0.12	-0.2
5,876,705	-		PS417_27220	0.25	-0.6
5,876,941	+		PS417_27220	0.39	-0.3
5,876,967	-		PS417_27220	0.40	-1.3
5,876,997	+		PS417_27220	0.42	-0.6
5,877,103	-		PS417_27220	0.48	-1.8
5,877,300	-		PS417_27220	0.60	-1.5
5,877,300	-		PS417_27220	0.60	+1.7
5,877,553	+		PS417_27220	0.75	+0.5
5,877,553	+		PS417_27220	0.75	+0.1
5,877,554	-		PS417_27220	0.75	-0.9
5,877,608	+		PS417_27220	0.78	-0.6
5,877,609	-		PS417_27220	0.78	-1.0
5,877,817	-				+1.2
5,877,850	+				+1.3
5,877,850	+				+0.9
5,877,850	+				-0.1
5,877,851	-				-0.2
5,877,851	-				+1.0
5,877,915	+				+0.0
5,877,919	-				+0.7
5,877,998	+				-1.1
5,877,998	+				+0.2
5,877,999	-				+0.3
5,878,036	+				-1.6
5,878,065	-				-1.1
5,878,065	-				+0.7
5,878,101	-				+0.1
5,878,101	-				-0.3
5,878,101	-				+0.1
5,878,101	-				-0.7
5,878,481	+		PS417_27225	0.47	-0.7
5,878,481	+		PS417_27225	0.47	-1.0
5,878,482	-		PS417_27225	0.47	+1.4
5,878,811	-		PS417_27225	0.83	+0.1
5,878,828	+		PS417_27225	0.85	+0.3
5,878,828	+		PS417_27225	0.85	+0.1