Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26715 and PS417_26720 are separated by 140 nucleotides PS417_26720 and PS417_26725 are separated by 57 nucleotides PS417_26725 and PS417_26730 are separated by 34 nucleotides
PS417_26715: PS417_26715 - peptidase P60, at 5,773,939 to 5,774,577
_26715
PS417_26720: PS417_26720 - twitching motility protein PilT, at 5,774,718 to 5,775,752
_26720
PS417_26725: PS417_26725 - hypothetical protein, at 5,775,810 to 5,776,496
_26725
PS417_26730: PS417_26730 - pyrroline-5-carboxylate reductase, at 5,776,531 to 5,777,349
_26730
Position (kb) 5774
5775
5776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5773.812 kb on + strand at 5773.902 kb on + strand at 5773.924 kb on + strand at 5773.976 kb on + strand at 5773.979 kb on + strand at 5774.242 kb on - strand, within PS417_26715 at 5774.242 kb on - strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.272 kb on + strand, within PS417_26715 at 5774.426 kb on - strand, within PS417_26715 at 5774.516 kb on - strand at 5774.553 kb on + strand at 5774.700 kb on + strand at 5774.701 kb on - strand at 5774.701 kb on - strand at 5774.710 kb on + strand at 5774.711 kb on - strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.721 kb on + strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5774.722 kb on - strand at 5775.261 kb on - strand, within PS417_26720 at 5775.411 kb on + strand, within PS417_26720 at 5775.411 kb on + strand, within PS417_26720 at 5775.412 kb on - strand, within PS417_26720 at 5775.412 kb on - strand, within PS417_26720 at 5775.461 kb on + strand, within PS417_26720 at 5775.603 kb on + strand, within PS417_26720 at 5775.603 kb on + strand, within PS417_26720 at 5775.604 kb on - strand, within PS417_26720 at 5775.604 kb on - strand, within PS417_26720 at 5775.736 kb on - strand at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.949 kb on - strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.981 kb on + strand, within PS417_26725 at 5775.982 kb on - strand, within PS417_26725 at 5776.015 kb on + strand, within PS417_26725 at 5776.545 kb on + strand at 5776.733 kb on + strand, within PS417_26730
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,773,812 + +0.7 5,773,902 + +0.1 5,773,924 + +0.7 5,773,976 + -0.6 5,773,979 + -0.5 5,774,242 - PS417_26715 0.47 -0.3 5,774,242 - PS417_26715 0.47 -0.3 5,774,272 + PS417_26715 0.52 +0.7 5,774,272 + PS417_26715 0.52 +1.0 5,774,272 + PS417_26715 0.52 -1.0 5,774,426 - PS417_26715 0.76 +0.6 5,774,516 - +0.5 5,774,553 + -0.2 5,774,700 + +0.2 5,774,701 - -0.4 5,774,701 - -0.4 5,774,710 + +0.2 5,774,711 - -0.4 5,774,721 + +1.1 5,774,721 + +0.1 5,774,721 + +0.1 5,774,721 + +1.1 5,774,721 + +0.1 5,774,722 - -0.6 5,774,722 - -0.0 5,774,722 - -0.9 5,774,722 - +0.5 5,774,722 - +0.2 5,774,722 - -2.0 5,774,722 - -0.2 5,774,722 - +2.7 5,774,722 - -2.3 5,775,261 - PS417_26720 0.52 +0.5 5,775,411 + PS417_26720 0.67 +1.3 5,775,411 + PS417_26720 0.67 +0.4 5,775,412 - PS417_26720 0.67 +1.0 5,775,412 - PS417_26720 0.67 +2.1 5,775,461 + PS417_26720 0.72 +1.9 5,775,603 + PS417_26720 0.86 +0.3 5,775,603 + PS417_26720 0.86 -1.7 5,775,604 - PS417_26720 0.86 -1.0 5,775,604 - PS417_26720 0.86 +0.3 5,775,736 - -0.9 5,775,949 - PS417_26725 0.20 +0.7 5,775,949 - PS417_26725 0.20 +1.0 5,775,949 - PS417_26725 0.20 -1.0 5,775,949 - PS417_26725 0.20 -1.8 5,775,981 + PS417_26725 0.25 +0.3 5,775,981 + PS417_26725 0.25 -1.2 5,775,981 + PS417_26725 0.25 -1.9 5,775,982 - PS417_26725 0.25 +1.5 5,776,015 + PS417_26725 0.30 -1.1 5,776,545 + -0.3 5,776,733 + PS417_26730 0.25 +1.7
Or see this region's nucleotide sequence