Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02645 and PS417_02650 are separated by 179 nucleotides PS417_02650 and PS417_02655 are separated by 374 nucleotides
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040
_02655
Position (kb) 606
607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 605.668 kb on + strand, within PS417_02645 at 605.669 kb on - strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.992 kb on + strand at 606.023 kb on - strand at 606.054 kb on + strand at 606.055 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.224 kb on + strand at 606.224 kb on + strand at 606.225 kb on - strand at 606.586 kb on - strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.802 kb on - strand, within PS417_02650 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.213 kb on - strand, within PS417_02650 at 607.245 kb on + strand, within PS417_02650 at 607.386 kb on + strand, within PS417_02650 at 607.386 kb on + strand at 607.390 kb on + strand, within PS417_02650 at 607.390 kb on + strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.463 kb on + strand at 607.464 kb on - strand at 607.473 kb on + strand at 607.495 kb on - strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.728 kb on + strand at 607.735 kb on + strand at 607.779 kb on + strand at 607.919 kb on + strand at 608.045 kb on + strand, within PS417_02655 at 608.045 kb on + strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.250 kb on - strand, within PS417_02655 at 608.332 kb on + strand at 608.332 kb on + strand, within PS417_02655 at 608.333 kb on - strand, within PS417_02655 at 608.375 kb on + strand, within PS417_02655 at 608.433 kb on - strand, within PS417_02655
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 605,668 + PS417_02645 0.73 -0.3 605,669 - PS417_02645 0.73 -1.6 605,671 + PS417_02645 0.73 +0.7 605,671 + PS417_02645 0.73 +0.3 605,671 + PS417_02645 0.73 +0.9 605,671 + PS417_02645 0.73 +0.8 605,672 - PS417_02645 0.74 +2.9 605,672 - PS417_02645 0.74 -0.9 605,746 + PS417_02645 0.78 -1.4 605,746 + PS417_02645 0.78 -0.4 605,992 + -0.8 606,023 - -0.3 606,054 + -0.6 606,055 - +0.7 606,139 + +0.7 606,140 - -0.3 606,224 + +0.6 606,224 + -0.3 606,225 - -1.3 606,586 - PS417_02650 0.26 +2.1 606,604 + PS417_02650 0.28 +2.5 606,604 + PS417_02650 0.28 +1.2 606,802 - PS417_02650 0.43 -0.5 606,958 - PS417_02650 0.55 +0.5 607,009 - PS417_02650 0.59 +0.6 607,009 - PS417_02650 0.59 +1.2 607,011 + PS417_02650 0.60 -0.3 607,012 - PS417_02650 0.60 -0.3 607,212 + PS417_02650 0.75 -0.9 607,212 + PS417_02650 0.75 +1.7 607,213 - PS417_02650 0.75 -0.7 607,245 + PS417_02650 0.78 -1.0 607,386 + PS417_02650 0.89 +1.1 607,386 + +0.7 607,390 + PS417_02650 0.89 +0.7 607,390 + PS417_02650 0.89 +1.7 607,391 - PS417_02650 0.89 -0.6 607,391 - PS417_02650 0.89 +0.4 607,391 - PS417_02650 0.89 -2.7 607,463 + -1.0 607,464 - +0.3 607,473 + -0.2 607,495 - -0.2 607,666 + +0.1 607,667 - -0.9 607,728 + -2.3 607,735 + -0.8 607,779 + +0.9 607,919 + +0.3 608,045 + PS417_02655 0.12 -1.6 608,045 + PS417_02655 0.12 -0.1 608,046 - PS417_02655 0.12 -0.6 608,046 - PS417_02655 0.12 +0.6 608,249 + PS417_02655 0.30 +1.6 608,249 + PS417_02655 0.30 -0.9 608,249 + PS417_02655 0.30 +0.0 608,250 - PS417_02655 0.30 +0.4 608,332 + -1.3 608,332 + PS417_02655 0.38 -3.5 608,333 - PS417_02655 0.38 -1.6 608,375 + PS417_02655 0.41 -0.5 608,433 - PS417_02655 0.47 -0.1
Or see this region's nucleotide sequence