Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02640 and PS417_02645 are separated by 154 nucleotides PS417_02645 and PS417_02650 are separated by 179 nucleotides
PS417_02640: PS417_02640 - LysR family transcriptional regulator, at 603,531 to 604,421
_02640
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 603.610 kb on + strand at 603.610 kb on + strand at 603.611 kb on - strand at 603.613 kb on + strand at 603.741 kb on - strand, within PS417_02640 at 603.741 kb on - strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.743 kb on - strand, within PS417_02640 at 603.770 kb on - strand, within PS417_02640 at 603.788 kb on - strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.977 kb on - strand, within PS417_02640 at 604.109 kb on - strand, within PS417_02640 at 604.159 kb on + strand, within PS417_02640 at 604.166 kb on + strand, within PS417_02640 at 604.512 kb on - strand at 604.810 kb on + strand, within PS417_02645 at 604.811 kb on - strand, within PS417_02645 at 604.934 kb on - strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645 at 605.668 kb on + strand, within PS417_02645 at 605.669 kb on - strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.992 kb on + strand at 606.023 kb on - strand at 606.054 kb on + strand at 606.055 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.224 kb on + strand at 606.224 kb on + strand at 606.225 kb on - strand at 606.586 kb on - strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.802 kb on - strand, within PS417_02650 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 603,610 + +0.1 603,610 + -2.7 603,611 - -1.9 603,613 + +0.5 603,741 - PS417_02640 0.24 -1.6 603,741 - PS417_02640 0.24 -0.8 603,742 + PS417_02640 0.24 -2.2 603,742 + PS417_02640 0.24 -0.7 603,742 + PS417_02640 0.24 +0.4 603,742 + PS417_02640 0.24 -0.3 603,743 - PS417_02640 0.24 -0.9 603,770 - PS417_02640 0.27 -1.7 603,788 - PS417_02640 0.29 +0.7 603,976 + PS417_02640 0.50 +0.5 603,976 + PS417_02640 0.50 -0.4 603,977 - PS417_02640 0.50 +0.8 604,109 - PS417_02640 0.65 -0.6 604,159 + PS417_02640 0.70 -2.0 604,166 + PS417_02640 0.71 +0.1 604,512 - -3.0 604,810 + PS417_02645 0.16 +2.8 604,811 - PS417_02645 0.16 -0.2 604,934 - PS417_02645 0.24 -0.2 604,971 + PS417_02645 0.26 +0.7 604,971 + PS417_02645 0.26 +1.2 604,971 + PS417_02645 0.26 -2.4 604,972 - PS417_02645 0.27 +0.1 604,972 - PS417_02645 0.27 +0.4 605,180 - PS417_02645 0.41 +0.1 605,180 - PS417_02645 0.41 +1.1 605,668 + PS417_02645 0.73 -0.3 605,669 - PS417_02645 0.73 -1.6 605,671 + PS417_02645 0.73 +0.7 605,671 + PS417_02645 0.73 +0.3 605,671 + PS417_02645 0.73 +0.9 605,671 + PS417_02645 0.73 +0.8 605,672 - PS417_02645 0.74 +2.9 605,672 - PS417_02645 0.74 -0.9 605,746 + PS417_02645 0.78 -1.4 605,746 + PS417_02645 0.78 -0.4 605,992 + -0.8 606,023 - -0.3 606,054 + -0.6 606,055 - +0.7 606,139 + +0.7 606,140 - -0.3 606,224 + +0.6 606,224 + -0.3 606,225 - -1.3 606,586 - PS417_02650 0.26 +2.1 606,604 + PS417_02650 0.28 +2.5 606,604 + PS417_02650 0.28 +1.2 606,802 - PS417_02650 0.43 -0.5 606,958 - PS417_02650 0.55 +0.5 607,009 - PS417_02650 0.59 +0.6 607,009 - PS417_02650 0.59 +1.2 607,011 + PS417_02650 0.60 -0.3 607,012 - PS417_02650 0.60 -0.3
Or see this region's nucleotide sequence