Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02595 and PS417_02600 overlap by 4 nucleotides PS417_02600 and PS417_02605 are separated by 187 nucleotides PS417_02605 and PS417_02610 are separated by 157 nucleotides
PS417_02595: PS417_02595 - NAD synthetase, at 591,743 to 592,675
_02595
PS417_02600: PS417_02600 - hypothetical protein, at 592,672 to 593,121
_02600
PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599
_02605
PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243
_02610
Position (kb) 593
594
595
596
597 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.454 kb on - strand, within PS417_02595 at 592.486 kb on - strand, within PS417_02595 at 592.609 kb on + strand at 592.609 kb on + strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.623 kb on + strand at 592.624 kb on - strand at 592.624 kb on - strand at 592.655 kb on + strand at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand at 592.825 kb on + strand, within PS417_02600 at 592.826 kb on - strand, within PS417_02600 at 592.842 kb on - strand, within PS417_02600 at 592.847 kb on + strand, within PS417_02600 at 592.925 kb on - strand, within PS417_02600 at 593.075 kb on + strand, within PS417_02600 at 593.127 kb on + strand at 593.190 kb on + strand at 593.214 kb on + strand at 593.215 kb on - strand at 593.229 kb on + strand at 593.261 kb on + strand at 593.262 kb on - strand at 593.345 kb on + strand at 593.352 kb on - strand at 593.492 kb on + strand at 593.492 kb on + strand at 593.532 kb on + strand at 593.532 kb on + strand at 593.533 kb on - strand at 593.533 kb on - strand at 593.625 kb on - strand at 593.696 kb on + strand, within PS417_02605 at 593.710 kb on - strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.209 kb on + strand, within PS417_02605 at 594.283 kb on - strand, within PS417_02605 at 594.283 kb on - strand, within PS417_02605 at 594.665 kb on + strand, within PS417_02605 at 594.665 kb on + strand, within PS417_02605 at 594.848 kb on + strand, within PS417_02605 at 594.849 kb on - strand, within PS417_02605 at 594.970 kb on + strand, within PS417_02605 at 594.970 kb on + strand, within PS417_02605 at 595.121 kb on + strand, within PS417_02605 at 595.122 kb on - strand, within PS417_02605 at 595.122 kb on - strand at 595.157 kb on + strand, within PS417_02605 at 595.158 kb on - strand, within PS417_02605 at 595.227 kb on - strand, within PS417_02605 at 595.508 kb on + strand, within PS417_02605 at 595.610 kb on + strand, within PS417_02605 at 595.610 kb on + strand, within PS417_02605 at 596.119 kb on - strand, within PS417_02605 at 596.156 kb on + strand, within PS417_02605 at 596.607 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.724 kb on - strand at 596.724 kb on - strand at 596.799 kb on + strand at 596.799 kb on + strand at 596.800 kb on - strand at 596.800 kb on - strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.950 kb on - strand at 596.950 kb on - strand at 597.146 kb on + strand, within PS417_02610 at 597.147 kb on - strand, within PS417_02610 at 597.443 kb on + strand, within PS417_02610 at 597.484 kb on - strand, within PS417_02610
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 592,454 - PS417_02595 0.76 -0.2 592,486 - PS417_02595 0.80 -2.2 592,609 + +0.5 592,609 + -2.0 592,610 - +0.4 592,610 - +1.2 592,610 - +0.8 592,623 + -0.6 592,624 - +0.1 592,624 - -0.6 592,655 + +0.3 592,789 + PS417_02600 0.26 -1.4 592,789 + PS417_02600 0.26 +0.0 592,789 + -0.3 592,825 + PS417_02600 0.34 -0.4 592,826 - PS417_02600 0.34 +0.0 592,842 - PS417_02600 0.38 -0.4 592,847 + PS417_02600 0.39 -0.0 592,925 - PS417_02600 0.56 -0.2 593,075 + PS417_02600 0.90 -0.3 593,127 + -0.8 593,190 + +0.8 593,214 + +2.7 593,215 - -0.6 593,229 + -0.3 593,261 + -0.3 593,262 - +0.3 593,345 + +0.4 593,352 - -1.5 593,492 + +1.9 593,492 + +0.5 593,532 + +1.3 593,532 + -0.6 593,533 - +0.4 593,533 - -1.2 593,625 - -0.3 593,696 + PS417_02605 0.12 -1.9 593,710 - PS417_02605 0.12 +0.1 594,011 + PS417_02605 0.21 -0.2 594,011 + PS417_02605 0.21 -1.1 594,011 + PS417_02605 0.21 -1.4 594,078 + PS417_02605 0.23 +1.0 594,078 + PS417_02605 0.23 -0.4 594,078 + PS417_02605 0.23 +0.4 594,078 + PS417_02605 0.23 -0.9 594,209 + PS417_02605 0.27 -1.7 594,283 - PS417_02605 0.30 -0.5 594,283 - PS417_02605 0.30 -0.9 594,665 + PS417_02605 0.41 -0.9 594,665 + PS417_02605 0.41 +0.2 594,848 + PS417_02605 0.47 -2.3 594,849 - PS417_02605 0.47 -2.0 594,970 + PS417_02605 0.50 +0.0 594,970 + PS417_02605 0.50 -0.5 595,121 + PS417_02605 0.55 -1.5 595,122 - PS417_02605 0.55 -0.3 595,122 - +0.4 595,157 + PS417_02605 0.56 +0.5 595,158 - PS417_02605 0.56 -0.1 595,227 - PS417_02605 0.58 +0.7 595,508 + PS417_02605 0.67 -0.8 595,610 + PS417_02605 0.70 -0.4 595,610 + PS417_02605 0.70 -0.9 596,119 - PS417_02605 0.85 +0.0 596,156 + PS417_02605 0.87 +0.2 596,607 + -0.8 596,659 + -0.1 596,659 + -0.6 596,659 + -1.0 596,659 + +1.1 596,659 + -0.7 596,660 - +2.1 596,660 - +0.1 596,703 + +1.0 596,703 + -0.4 596,703 + -1.7 596,703 + +1.3 596,703 + +0.7 596,703 + -0.2 596,704 - +2.3 596,704 - +0.4 596,724 - +0.4 596,724 - +1.4 596,799 + -0.2 596,799 + -0.7 596,800 - +0.0 596,800 - +0.2 596,940 + +0.1 596,940 + +0.4 596,940 + +0.5 596,941 - +1.7 596,941 - -0.2 596,941 - -0.9 596,950 - -0.6 596,950 - +0.3 597,146 + PS417_02610 0.16 -2.0 597,147 - PS417_02610 0.16 -1.3 597,443 + PS417_02610 0.28 -2.2 597,484 - PS417_02610 0.29 -0.7
Or see this region's nucleotide sequence