Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26120 and PS417_26125 are separated by 34 nucleotides PS417_26125 and PS417_26130 are separated by 94 nucleotides PS417_26130 and PS417_26135 are separated by 51 nucleotides
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
PS417_26130: PS417_26130 - membrane protein, at 5,646,694 to 5,648,067
_26130
PS417_26135: PS417_26135 - histidine kinase, at 5,648,119 to 5,649,558
_26135
Position (kb) 5646
5647
5648
5649 Strain fitness (log2 ratio) -2
-1
0
1 at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125 at 5646.484 kb on - strand, within PS417_26125 at 5646.608 kb on - strand at 5646.755 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.857 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.977 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5647.026 kb on - strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.143 kb on - strand, within PS417_26130 at 5647.169 kb on + strand, within PS417_26130 at 5647.319 kb on - strand, within PS417_26130 at 5647.384 kb on + strand, within PS417_26130 at 5647.731 kb on - strand, within PS417_26130 at 5647.797 kb on - strand, within PS417_26130 at 5647.919 kb on + strand, within PS417_26130 at 5647.919 kb on + strand, within PS417_26130 at 5648.347 kb on + strand, within PS417_26135 at 5648.347 kb on + strand, within PS417_26135 at 5648.347 kb on + strand, within PS417_26135 at 5648.348 kb on - strand, within PS417_26135 at 5648.468 kb on + strand, within PS417_26135 at 5648.469 kb on - strand, within PS417_26135 at 5648.545 kb on + strand, within PS417_26135 at 5648.707 kb on - strand, within PS417_26135 at 5648.779 kb on + strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.783 kb on + strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.796 kb on - strand, within PS417_26135 at 5649.032 kb on + strand, within PS417_26135 at 5649.033 kb on - strand, within PS417_26135
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,645,811 + PS417_26120 0.80 -0.1 5,645,812 - PS417_26120 0.80 -0.5 5,645,898 - -0.5 5,645,903 + -0.3 5,645,904 - -0.0 5,646,024 - -0.3 5,646,202 - PS417_26125 0.37 +0.1 5,646,484 - PS417_26125 0.82 -0.2 5,646,608 - -0.3 5,646,755 + +0.7 5,646,768 + -0.5 5,646,768 + +0.2 5,646,768 + +0.2 5,646,857 + PS417_26130 0.12 -1.3 5,646,869 + PS417_26130 0.13 +0.4 5,646,869 + PS417_26130 0.13 -0.8 5,646,869 + PS417_26130 0.13 -0.6 5,646,870 - PS417_26130 0.13 -1.2 5,646,870 - PS417_26130 0.13 -0.4 5,646,935 + PS417_26130 0.18 +0.1 5,646,935 + PS417_26130 0.18 -2.4 5,646,936 - PS417_26130 0.18 -0.4 5,646,936 - PS417_26130 0.18 -0.7 5,646,936 - PS417_26130 0.18 -0.8 5,646,977 + PS417_26130 0.21 -0.6 5,646,994 + -0.3 5,646,994 + PS417_26130 0.22 -0.1 5,646,994 + PS417_26130 0.22 -1.2 5,646,994 + PS417_26130 0.22 -0.9 5,646,994 + +1.7 5,646,994 + PS417_26130 0.22 -0.2 5,646,995 - PS417_26130 0.22 -0.4 5,646,995 - PS417_26130 0.22 -0.3 5,647,026 - PS417_26130 0.24 -1.3 5,647,142 + PS417_26130 0.33 +0.0 5,647,142 + PS417_26130 0.33 +0.9 5,647,142 + PS417_26130 0.33 +0.2 5,647,142 + PS417_26130 0.33 -1.5 5,647,143 - PS417_26130 0.33 -0.5 5,647,169 + PS417_26130 0.35 -2.4 5,647,319 - PS417_26130 0.45 +0.5 5,647,384 + PS417_26130 0.50 -1.1 5,647,731 - PS417_26130 0.75 +0.6 5,647,797 - PS417_26130 0.80 +0.2 5,647,919 + PS417_26130 0.89 +0.3 5,647,919 + PS417_26130 0.89 +1.1 5,648,347 + PS417_26135 0.16 -0.9 5,648,347 + PS417_26135 0.16 +0.3 5,648,347 + PS417_26135 0.16 +0.4 5,648,348 - PS417_26135 0.16 +0.4 5,648,468 + PS417_26135 0.24 +0.7 5,648,469 - PS417_26135 0.24 +1.1 5,648,545 + PS417_26135 0.30 -0.5 5,648,707 - PS417_26135 0.41 +0.5 5,648,779 + PS417_26135 0.46 +0.1 5,648,780 - PS417_26135 0.46 +0.0 5,648,780 - PS417_26135 0.46 +0.6 5,648,780 - PS417_26135 0.46 -0.0 5,648,783 + PS417_26135 0.46 -0.2 5,648,784 - PS417_26135 0.46 -0.2 5,648,784 - PS417_26135 0.46 -0.1 5,648,796 - PS417_26135 0.47 -0.2 5,649,032 + PS417_26135 0.63 -1.3 5,649,033 - PS417_26135 0.63 -0.5
Or see this region's nucleotide sequence