Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26030 and PS417_26035 are separated by 223 nucleotides PS417_26035 and PS417_26040 are separated by 267 nucleotides
PS417_26030: PS417_26030 - chloramphenical resistance permease RarD, at 5,624,544 to 5,625,428
_26030
PS417_26035: PS417_26035 - glycine cleavage system protein R, at 5,625,652 to 5,626,164
_26035
PS417_26040: PS417_26040 - malate synthase, at 5,626,432 to 5,628,609
_26040
Position (kb) 5625
5626
5627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5624.663 kb on - strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand at 5624.812 kb on - strand, within PS417_26030 at 5624.860 kb on - strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5625.258 kb on + strand, within PS417_26030 at 5625.401 kb on + strand at 5625.439 kb on + strand at 5625.636 kb on + strand at 5625.637 kb on - strand at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on - strand, within PS417_26035 at 5625.804 kb on + strand, within PS417_26035 at 5626.140 kb on + strand at 5626.141 kb on - strand at 5626.150 kb on + strand at 5626.189 kb on + strand at 5626.190 kb on - strand at 5626.324 kb on + strand at 5626.325 kb on - strand at 5626.325 kb on - strand at 5626.329 kb on - strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.361 kb on - strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.364 kb on - strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.381 kb on - strand at 5626.381 kb on - strand at 5626.384 kb on + strand at 5626.847 kb on - strand, within PS417_26040 at 5626.858 kb on + strand, within PS417_26040 at 5626.859 kb on - strand, within PS417_26040 at 5626.910 kb on - strand, within PS417_26040 at 5626.910 kb on - strand, within PS417_26040 at 5626.920 kb on - strand, within PS417_26040
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,624,663 - PS417_26030 0.13 +0.6 5,624,811 + PS417_26030 0.30 -0.5 5,624,811 + PS417_26030 0.30 +0.4 5,624,811 + PS417_26030 0.30 -0.1 5,624,811 + PS417_26030 0.30 -0.1 5,624,812 - PS417_26030 0.30 -0.6 5,624,812 - PS417_26030 0.30 -0.4 5,624,812 - -0.9 5,624,812 - PS417_26030 0.30 -0.4 5,624,860 - PS417_26030 0.36 +0.8 5,624,862 + PS417_26030 0.36 -1.0 5,624,862 + PS417_26030 0.36 -0.4 5,624,862 + PS417_26030 0.36 +0.7 5,624,862 + PS417_26030 0.36 +0.3 5,624,862 + PS417_26030 0.36 +0.1 5,624,863 - PS417_26030 0.36 -0.1 5,624,863 - PS417_26030 0.36 +0.1 5,624,863 - PS417_26030 0.36 -0.5 5,624,863 - PS417_26030 0.36 -0.0 5,625,258 + PS417_26030 0.81 +0.8 5,625,401 + -0.4 5,625,439 + -0.6 5,625,636 + +0.1 5,625,637 - -1.0 5,625,706 + PS417_26035 0.11 -1.0 5,625,706 + PS417_26035 0.11 +0.1 5,625,706 - PS417_26035 0.11 -0.5 5,625,804 + PS417_26035 0.30 -0.6 5,626,140 + +0.4 5,626,141 - +0.1 5,626,150 + +0.5 5,626,189 + +4.0 5,626,190 - -0.3 5,626,324 + -1.3 5,626,325 - +0.1 5,626,325 - +0.8 5,626,329 - +0.4 5,626,360 + -0.9 5,626,360 + -3.0 5,626,360 + -0.4 5,626,360 + +0.5 5,626,361 - -0.5 5,626,363 + -0.5 5,626,363 + +2.4 5,626,363 + -0.4 5,626,364 - +0.1 5,626,380 + -0.9 5,626,380 + +0.3 5,626,380 + +0.6 5,626,380 + +0.7 5,626,381 - +1.0 5,626,381 - +0.1 5,626,384 + -1.4 5,626,847 - PS417_26040 0.19 -0.8 5,626,858 + PS417_26040 0.20 -1.3 5,626,859 - PS417_26040 0.20 -0.5 5,626,910 - PS417_26040 0.22 -0.9 5,626,910 - PS417_26040 0.22 +1.7 5,626,920 - PS417_26040 0.22 -1.1
Or see this region's nucleotide sequence