Strain Fitness in Pseudomonas simiae WCS417 around PS417_25970

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,610,363	+		PS417_25965	0.62	+1.0
5,610,364	-		PS417_25965	0.62	+0.1
5,610,403	+		PS417_25965	0.64	+0.3
5,610,404	-		PS417_25965	0.64	+1.2
5,610,477	-		PS417_25965	0.68	+0.1
5,610,662	+		PS417_25965	0.79	-2.8
5,610,663	-		PS417_25965	0.79	-1.9
5,610,663	-		PS417_25965	0.79	+0.1
5,610,663	-		PS417_25965	0.79	+0.1
5,610,663	-		PS417_25965	0.79	+2.6
5,610,743	+		PS417_25965	0.83	-0.0
5,610,744	-		PS417_25965	0.83	-0.6
5,610,785	+		PS417_25965	0.86	-0.7
5,610,820	-		PS417_25965	0.88	-0.6
5,610,820	-		PS417_25965	0.88	+0.6
5,611,102	+				-0.4
5,611,103	-				+0.6
5,611,218	-				+0.5
5,611,239	+				+0.4
5,611,392	-		PS417_25970	0.20	+0.4
5,611,619	+		PS417_25970	0.38	+2.4
5,611,619	+		PS417_25970	0.38	+1.1
5,611,619	+		PS417_25970	0.38	+0.7
5,611,619	+		PS417_25970	0.38	+1.8
5,611,619	+		PS417_25970	0.38	+1.7
5,611,619	+		PS417_25970	0.38	+2.3
5,611,620	-		PS417_25970	0.38	+2.8
5,611,620	-		PS417_25970	0.38	+0.4
5,611,620	-		PS417_25970	0.38	+0.8
5,612,087	+		PS417_25970	0.74	-0.3
5,612,088	-		PS417_25970	0.74	+1.5
5,612,211	-		PS417_25970	0.84	+0.8
5,612,211	-		PS417_25970	0.84	+0.6
5,612,211	-		PS417_25970	0.84	+0.5
5,612,249	+		PS417_25970	0.87	+1.7
5,612,249	+		PS417_25970	0.87	-0.9
5,612,262	-		PS417_25970	0.88	+0.5
5,612,339	+				-1.3
5,612,339	+				+0.7
5,612,340	-				+0.1
5,612,473	+				+0.8
5,612,493	+				+1.3
5,612,493	+				+0.7
5,612,493	+				+1.4
5,612,493	+				+0.3
5,612,493	+				-2.1
5,612,494	-				-2.0
5,612,494	-				-2.9
5,612,494	-				-4.7
5,612,495	+				-0.6
5,612,495	+				+2.0
5,612,496	-				-1.5
5,612,496	-				-0.9
5,612,496	-				-2.3
5,612,680	+				+0.9
5,612,680	+				+0.1
5,612,680	+				-0.9
5,612,683	+				+0.2
5,612,684	-				+0.7
5,612,786	-				-2.6
5,612,815	+				+0.3
5,612,816	-				+0.9
5,612,884	+		PS417_25975	0.11	+0.0
5,612,885	-		PS417_25975	0.11	-1.4
5,612,908	+		PS417_25975	0.13	-0.1
5,612,909	-		PS417_25975	0.13	-0.8
5,613,123	-				+0.7
5,613,359	-				+1.7
5,613,391	+		PS417_25975	0.39	-0.2