Strain Fitness in Pseudomonas simiae WCS417 around PS417_25825

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,575,002	+		PS417_25815	0.64	-0.7
5,575,003	-		PS417_25815	0.64	-1.5
5,575,003	-		PS417_25815	0.64	-0.0
5,575,006	+		PS417_25815	0.65	-0.2
5,575,006	+		PS417_25815	0.65	-0.8
5,575,006	+		PS417_25815	0.65	-0.9
5,575,006	+		PS417_25815	0.65	+0.1
5,575,007	-		PS417_25815	0.65	-1.1
5,575,934	+				+1.4
5,575,935	-				-1.2
5,575,965	-				-0.2
5,575,989	+				+0.6
5,576,018	+				+0.7
5,576,018	+				-0.2
5,576,091	+		PS417_25825	0.27	+6.1
5,576,193	+		PS417_25825	0.58	+1.1
5,576,256	+		PS417_25825	0.77	+1.7
5,576,257	-		PS417_25825	0.78	+1.1
5,576,257	-		PS417_25825	0.78	-2.4
5,576,257	-		PS417_25825	0.78	-2.2
5,576,402	+				-0.9
5,576,403	-				-2.8
5,576,440	+				+0.1
5,576,441	-				+0.0
5,576,441	-				-1.6
5,576,593	+				-1.6
5,576,620	+				-0.0
5,576,718	-				-0.1
5,576,718	-				+0.5
5,576,934	-		PS417_25830	0.17	-0.8
5,577,012	-		PS417_25830	0.21	-0.5