Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25685 and PS417_25690 are separated by 116 nucleotides PS417_25690 and PS417_25695 are separated by 61 nucleotides PS417_25695 and PS417_25700 are separated by 247 nucleotides PS417_25700 and PS417_25705 overlap by 4 nucleotides
PS417_25685: PS417_25685 - zinc-binding protein, at 5,547,410 to 5,547,748
_25685
PS417_25690: PS417_25690 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,547,865 to 5,548,512
_25690
PS417_25695: PS417_25695 - peroxiredoxin, at 5,548,574 to 5,548,996
_25695
PS417_25700: PS417_25700 - cyclic AMP receptor protein, at 5,549,244 to 5,549,888
_25700
PS417_25705: PS417_25705 - lipoate--protein ligase, at 5,549,885 to 5,550,580
_25705
Position (kb) 5548
5549 Strain fitness (log2 ratio) -1
0
1 at 5547.577 kb on + strand, within PS417_25685 at 5547.578 kb on - strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.596 kb on - strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand at 5547.763 kb on + strand at 5548.597 kb on - strand at 5548.651 kb on - strand, within PS417_25695 at 5548.651 kb on - strand, within PS417_25695 at 5548.742 kb on + strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5549.034 kb on - strand at 5549.199 kb on + strand at 5549.215 kb on - strand at 5549.215 kb on - strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.553 kb on + strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.554 kb on - strand, within PS417_25700 at 5549.598 kb on + strand, within PS417_25700 at 5549.926 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,547,577 + PS417_25685 0.49 +0.4 5,547,578 - PS417_25685 0.50 -0.2 5,547,595 + PS417_25685 0.55 +0.4 5,547,595 + PS417_25685 0.55 -0.6 5,547,595 + PS417_25685 0.55 -1.6 5,547,595 + PS417_25685 0.55 -1.2 5,547,595 + PS417_25685 0.55 +0.8 5,547,596 - PS417_25685 0.55 -1.3 5,547,703 + PS417_25685 0.86 +0.3 5,547,703 + PS417_25685 0.86 +0.0 5,547,703 + PS417_25685 0.86 +0.6 5,547,704 - PS417_25685 0.87 +0.0 5,547,704 - PS417_25685 0.87 -0.7 5,547,704 - +1.0 5,547,763 + +0.2 5,548,597 - -0.1 5,548,651 - PS417_25695 0.18 +0.3 5,548,651 - PS417_25695 0.18 -1.3 5,548,742 + PS417_25695 0.40 -0.3 5,548,743 - PS417_25695 0.40 -1.6 5,548,743 - PS417_25695 0.40 -0.6 5,549,034 - +0.5 5,549,199 + -0.7 5,549,215 - +1.1 5,549,215 - -1.6 5,549,237 + -0.9 5,549,237 + +0.4 5,549,237 + -0.3 5,549,553 + PS417_25700 0.48 +0.3 5,549,554 - PS417_25700 0.48 +0.4 5,549,554 - PS417_25700 0.48 +1.3 5,549,598 + PS417_25700 0.55 -1.3 5,549,926 + +0.7
Or see this region's nucleotide sequence