Strain Fitness in Pseudomonas simiae WCS417 around PS417_23870

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,163,191	+		PS417_23860	0.32	+1.3
5,163,191	+		PS417_23860	0.32	+0.5
5,163,192	-		PS417_23860	0.32	-0.5
5,163,197	+		PS417_23860	0.34	+1.6
5,163,197	+		PS417_23860	0.34	-0.0
5,163,197	+		PS417_23860	0.34	-0.4
5,163,197	+		PS417_23860	0.34	+0.1
5,163,197	+		PS417_23860	0.34	-1.2
5,163,197	+				+1.2
5,163,198	-		PS417_23860	0.34	+2.2
5,163,198	-		PS417_23860	0.34	-1.2
5,163,198	-		PS417_23860	0.34	-0.4
5,163,355	+		PS417_23860	0.84	-1.2
5,163,415	+				+0.8
5,163,415	+				-0.1
5,163,415	+				+0.9
5,163,416	-				-1.6
5,163,416	-				-0.2
5,163,416	-				-0.0
5,163,416	-				-0.3
5,163,438	-				-0.4
5,163,438	-				-0.0
5,163,468	-				+0.3
5,163,519	-		PS417_23865	0.16	-0.2
5,163,519	-		PS417_23865	0.16	-1.6
5,163,578	+		PS417_23865	0.25	-0.3
5,163,578	+		PS417_23865	0.25	+0.8
5,163,578	+		PS417_23865	0.25	+0.3
5,163,578	+		PS417_23865	0.25	-0.2
5,163,579	-		PS417_23865	0.25	-0.8
5,163,579	-		PS417_23865	0.25	+0.5
5,163,701	-		PS417_23865	0.42	-0.5
5,163,824	-		PS417_23865	0.59	+0.1
5,163,987	+		PS417_23865	0.82	-2.5
5,163,987	+		PS417_23865	0.82	+3.3
5,163,987	+		PS417_23865	0.82	-1.2
5,163,987	+		PS417_23865	0.82	-0.4
5,163,988	-		PS417_23865	0.82	-2.4
5,163,988	-		PS417_23865	0.82	-0.9
5,163,988	-		PS417_23865	0.82	-1.7
5,164,067	+				+1.2
5,164,068	-				+0.4
5,164,319	-		PS417_23870	0.18	-0.1
5,164,324	+		PS417_23870	0.18	+2.8
5,164,325	-		PS417_23870	0.18	+1.6
5,164,495	+		PS417_23870	0.33	+0.8
5,164,495	+		PS417_23870	0.33	+0.5
5,164,495	+		PS417_23870	0.33	-1.5
5,164,495	+		PS417_23870	0.33	+0.5
5,164,583	-		PS417_23870	0.40	+0.3
5,164,651	+		PS417_23870	0.46	+0.3
5,164,652	-		PS417_23870	0.46	-0.3
5,164,652	-		PS417_23870	0.46	+0.5
5,164,666	+		PS417_23870	0.47	+0.7
5,164,666	+		PS417_23870	0.47	+2.4
5,164,666	+		PS417_23870	0.47	+0.8
5,164,667	-		PS417_23870	0.47	+5.1
5,164,667	-		PS417_23870	0.47	-0.4
5,164,835	-		PS417_23870	0.62	+1.0
5,165,041	+		PS417_23870	0.79	+0.1
5,165,090	+		PS417_23870	0.83	-0.1
5,165,090	+		PS417_23870	0.83	-0.2
5,165,091	-		PS417_23870	0.83	-0.8
5,165,092	+		PS417_23870	0.83	-0.2
5,165,093	-		PS417_23870	0.84	-2.4
5,165,093	-		PS417_23870	0.84	+1.0
5,165,272	+				+0.3
5,165,273	-				-0.3
5,165,339	-				-1.9
5,165,350	+				+0.6
5,165,350	+				+2.5
5,165,350	+				+0.4
5,165,351	-				+0.3
5,165,351	-				+0.1
5,165,409	-				+0.2
5,165,409	-				-2.1
5,165,422	+				+1.6
5,165,422	+				+0.5
5,165,423	-				+0.1
5,165,423	-				-0.7
5,165,427	-				-1.9
5,165,427	-				+0.8
5,165,449	+				-0.7
5,165,449	+				-0.7
5,165,506	+				-1.2
5,165,580	+				-1.7
5,166,143	+				+0.1
5,166,147	+				+0.8
5,166,147	+				-1.8
5,166,147	+				+0.3
5,166,147	+				+0.2
5,166,148	-				-0.4
5,166,148	-				-1.1