Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20720 and PS417_20725 overlap by 1 nucleotides PS417_20725 and PS417_20730 are separated by 6 nucleotides PS417_20730 and PS417_20735 overlap by 4 nucleotides PS417_20735 and PS417_20740 are separated by 172 nucleotides PS417_20740 and PS417_20745 overlap by 1 nucleotides
PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201
_20720
PS417_20725: PS417_20725 - cbb3-type cytochrome c oxidase subunit II, at 4,505,201 to 4,505,809
_20725
PS417_20730: PS417_20730 - cytochrome oxidase, at 4,505,816 to 4,506,001
_20730
PS417_20735: PS417_20735 - cytochrome Cbb3, at 4,505,998 to 4,506,975
_20735
PS417_20740: PS417_20740 - prevent-host-death protein, at 4,507,148 to 4,507,402
_20740
PS417_20745: PS417_20745 - twitching motility protein PilT, at 4,507,402 to 4,507,812
_20745
Position (kb) 4505
4506
4507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4505.061 kb on + strand at 4505.118 kb on + strand at 4505.119 kb on - strand at 4505.376 kb on - strand, within PS417_20725 at 4505.573 kb on + strand, within PS417_20725 at 4505.983 kb on + strand at 4506.020 kb on - strand at 4506.146 kb on - strand, within PS417_20735 at 4506.818 kb on - strand, within PS417_20735 at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.935 kb on - strand at 4506.973 kb on + strand at 4507.075 kb on - strand at 4507.114 kb on + strand at 4507.260 kb on + strand, within PS417_20740 at 4507.260 kb on + strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.261 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.267 kb on - strand, within PS417_20740 at 4507.405 kb on + strand at 4507.405 kb on + strand at 4507.406 kb on - strand at 4507.406 kb on - strand at 4507.425 kb on + strand at 4507.426 kb on - strand at 4507.426 kb on - strand at 4507.441 kb on - strand at 4507.515 kb on + strand, within PS417_20745 at 4507.515 kb on + strand, within PS417_20745 at 4507.516 kb on - strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.607 kb on + strand, within PS417_20745 at 4507.608 kb on - strand, within PS417_20745 at 4507.608 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.728 kb on - strand, within PS417_20745 at 4507.730 kb on + strand, within PS417_20745 at 4507.731 kb on - strand, within PS417_20745 at 4507.731 kb on - strand, within PS417_20745 at 4507.838 kb on + strand at 4507.919 kb on + strand at 4507.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 4,505,061 + -1.2 4,505,118 + +0.3 4,505,119 - -1.2 4,505,376 - PS417_20725 0.29 -1.1 4,505,573 + PS417_20725 0.61 -3.2 4,505,983 + -0.1 4,506,020 - -1.6 4,506,146 - PS417_20735 0.15 -0.9 4,506,818 - PS417_20735 0.84 -2.1 4,506,929 - -1.0 4,506,929 - -0.8 4,506,929 - +0.6 4,506,935 - +1.0 4,506,973 + +1.9 4,507,075 - -0.6 4,507,114 + -0.2 4,507,260 + PS417_20740 0.44 -0.4 4,507,260 + PS417_20740 0.44 +1.2 4,507,261 - PS417_20740 0.44 -1.0 4,507,261 - PS417_20740 0.44 +0.6 4,507,261 - PS417_20740 0.44 +0.1 4,507,261 - PS417_20740 0.44 +0.5 4,507,267 - PS417_20740 0.47 -1.9 4,507,267 - PS417_20740 0.47 -0.4 4,507,267 - PS417_20740 0.47 -1.0 4,507,267 - PS417_20740 0.47 -0.5 4,507,405 + +0.7 4,507,405 + -1.2 4,507,406 - -0.9 4,507,406 - -0.1 4,507,425 + -0.9 4,507,426 - -1.3 4,507,426 - -1.9 4,507,441 - -0.7 4,507,515 + PS417_20745 0.27 -1.9 4,507,515 + PS417_20745 0.27 +0.1 4,507,516 - PS417_20745 0.28 +0.2 4,507,607 + PS417_20745 0.50 -0.2 4,507,607 + PS417_20745 0.50 -0.6 4,507,607 + PS417_20745 0.50 +1.0 4,507,607 + PS417_20745 0.50 -0.8 4,507,608 - PS417_20745 0.50 -0.0 4,507,608 - PS417_20745 0.50 -1.7 4,507,728 - PS417_20745 0.79 -0.2 4,507,728 - PS417_20745 0.79 +0.3 4,507,728 - PS417_20745 0.79 +0.4 4,507,730 + PS417_20745 0.80 -0.6 4,507,731 - PS417_20745 0.80 +1.6 4,507,731 - PS417_20745 0.80 +0.1 4,507,838 + -2.0 4,507,919 + -0.5 4,507,933 + +1.4
Or see this region's nucleotide sequence