Strain Fitness in Pseudomonas simiae WCS417 around PS417_20660

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,489,149	+				+0.8
4,489,226	+		PS417_20655	0.16	-2.5
4,489,226	+		PS417_20655	0.16	+0.8
4,489,227	-		PS417_20655	0.16	-0.3
4,489,329	+		PS417_20655	0.26	-1.7
4,489,476	-		PS417_20655	0.39	-2.1
4,489,495	-		PS417_20655	0.41	-1.0
4,489,542	+		PS417_20655	0.46	+0.3
4,489,543	-		PS417_20655	0.46	-1.0
4,489,543	-		PS417_20655	0.46	-2.6
4,489,543	-		PS417_20655	0.46	-1.7
4,489,595	+		PS417_20655	0.51	+0.7
4,489,600	+		PS417_20655	0.51	-2.2
4,489,601	-		PS417_20655	0.51	-0.5
4,489,601	-		PS417_20655	0.51	-0.6
4,489,673	+		PS417_20655	0.58	+0.4
4,489,673	+		PS417_20655	0.58	+0.8
4,489,754	+		PS417_20655	0.65	+2.5
4,489,765	-		PS417_20655	0.66	-1.4
4,489,812	+		PS417_20655	0.71	-1.1
4,489,812	+		PS417_20655	0.71	-1.9
4,489,820	+		PS417_20655	0.72	-0.6
4,489,820	+		PS417_20655	0.72	-0.4
4,489,820	+		PS417_20655	0.72	-0.7
4,489,821	-		PS417_20655	0.72	-1.2
4,489,821	-		PS417_20655	0.72	-4.5
4,489,821	-		PS417_20655	0.72	-1.4
4,489,876	+		PS417_20655	0.77	-0.4
4,489,877	-		PS417_20655	0.77	+0.3
4,489,986	+		PS417_20655	0.87	-1.6
4,489,986	+		PS417_20655	0.87	+1.0
4,489,986	+		PS417_20655	0.87	+1.2
4,489,987	-		PS417_20655	0.87	+0.6
4,490,051	+				+0.6
4,490,248	+		PS417_20660	0.24	-1.2
4,490,290	-		PS417_20660	0.32	-0.4
4,490,312	-		PS417_20660	0.36	+0.6
4,490,312	-		PS417_20660	0.36	-0.5
4,490,431	+		PS417_20660	0.59	-1.4
4,490,432	-		PS417_20660	0.59	+1.0
4,490,432	-		PS417_20660	0.59	-0.9
4,490,432	-		PS417_20660	0.59	-0.5
4,490,434	-		PS417_20660	0.59	-1.1
4,490,504	+		PS417_20660	0.73	-0.4
4,490,505	-		PS417_20660	0.73	-0.7
4,490,543	-		PS417_20660	0.80	-1.0
4,490,550	+		PS417_20660	0.82	+1.6
4,490,551	-		PS417_20660	0.82	-1.1
4,490,564	+		PS417_20660	0.84	+0.8
4,490,564	+		PS417_20660	0.84	-1.4
4,490,565	-		PS417_20660	0.85	-1.9
4,490,565	-		PS417_20660	0.85	+1.6
4,490,565	-				+1.2
4,490,565	-		PS417_20660	0.85	-1.6
4,490,618	+				-0.5
4,490,643	-				+0.6
4,490,657	+				+1.6
4,490,657	+				-0.9
4,490,658	-				+0.9
4,490,658	-				-0.2
4,490,676	+				-0.0
4,490,677	-				-2.5
4,490,697	-				-1.5
4,490,706	+				-0.9
4,490,706	+				-1.2
4,490,706	+				+1.6
4,490,707	-				-1.1
4,490,707	-				-0.4
4,490,707	-				-1.6
4,490,707	-				-1.0
4,490,707	-				-0.4
4,490,752	+				+0.6
4,490,753	-				-1.0
4,490,753	-				-2.5
4,490,753	-				-0.4
4,490,753	-				-0.5
4,490,767	+				-1.2
4,490,767	+				-0.7
4,490,817	+				-1.2
4,490,848	-				-0.2
4,490,851	+				-2.2
4,490,852	-				-0.0
4,491,102	+		PS417_20665	0.20	-1.0
4,491,103	-		PS417_20665	0.20	-0.0
4,491,104	+		PS417_20665	0.20	+0.6
4,491,152	+		PS417_20665	0.23	+0.3
4,491,152	+		PS417_20665	0.23	-0.4
4,491,152	+		PS417_20665	0.23	-0.5
4,491,153	-		PS417_20665	0.23	-2.2
4,491,154	+		PS417_20665	0.23	-0.2
4,491,154	+		PS417_20665	0.23	+0.4
4,491,155	-		PS417_20665	0.23	-1.8
4,491,254	+		PS417_20665	0.29	-1.7
4,491,258	+				+0.6
4,491,259	-		PS417_20665	0.29	-1.9
4,491,259	-		PS417_20665	0.29	-0.7
4,491,322	-		PS417_20665	0.33	+2.6
4,491,489	-		PS417_20665	0.42	-0.7
4,491,613	+		PS417_20665	0.50	-1.8
4,491,624	+		PS417_20665	0.50	-1.5