Strain Fitness in Pseudomonas simiae WCS417 around PS417_02025

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02025 and PS417_02030 are separated by 26 nucleotides PS417_02025: PS417_02025 - hypothetical protein, at 455,921 to 456,373 _02025 PS417_02030: PS417_02030 - 3-oxoacyl-ACP synthase, at 456,400 to 457,626 _02030 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1at 455.868 kb on + strandat 456.045 kb on + strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.072 kb on + strand, within PS417_02025at 456.096 kb on + strand, within PS417_02025at 456.097 kb on - strand, within PS417_02025at 456.144 kb on + strand, within PS417_02025at 456.467 kb on + strandat 456.503 kb on + strandat 456.557 kb on + strand, within PS417_02030at 456.557 kb on + strand, within PS417_02030at 456.557 kb on + strand, within PS417_02030at 456.733 kb on + strand, within PS417_02030at 456.734 kb on - strand, within PS417_02030at 457.011 kb on - strandat 457.224 kb on - strand, within PS417_02030at 457.224 kb on - strand, within PS417_02030at 457.224 kb on - strand, within PS417_02030

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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455,868 + +1.5
456,045 + PS417_02025 0.27 -0.5
456,046 - PS417_02025 0.28 -0.2
456,046 - PS417_02025 0.28 +1.7
456,046 - PS417_02025 0.28 +0.1
456,072 + PS417_02025 0.33 -0.4
456,096 + PS417_02025 0.39 -0.7
456,097 - PS417_02025 0.39 -0.4
456,144 + PS417_02025 0.49 -0.7
456,467 + +1.7
456,503 + -0.1
456,557 + PS417_02030 0.13 +0.4
456,557 + PS417_02030 0.13 +0.9
456,557 + PS417_02030 0.13 -0.9
456,733 + PS417_02030 0.27 +0.1
456,734 - PS417_02030 0.27 +0.4
457,011 - +0.7
457,224 - PS417_02030 0.67 -2.0
457,224 - PS417_02030 0.67 +1.0
457,224 - PS417_02030 0.67 -2.9

Or see this region's nucleotide sequence