Strain Fitness in Pseudomonas simiae WCS417 around PS417_20285

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,403,765	-		PS417_20280	0.33	+0.0
4,403,880	+		PS417_20280	0.47	-0.1
4,403,884	+		PS417_20280	0.48	+0.1
4,403,884	+		PS417_20280	0.48	-1.1
4,403,885	-		PS417_20280	0.48	-1.8
4,403,885	-				-0.5
4,403,926	+		PS417_20280	0.53	+0.5
4,403,926	+		PS417_20280	0.53	-0.3
4,403,927	-		PS417_20280	0.53	+2.8
4,404,055	+		PS417_20280	0.69	+0.5
4,404,056	-		PS417_20280	0.69	-1.9
4,404,056	-		PS417_20280	0.69	-1.9
4,404,286	+				+0.1
4,404,328	+				-0.2
4,404,329	-				+0.1
4,404,331	+				-1.1
4,404,351	+				+2.3
4,404,351	+				+1.7
4,404,351	+				-1.1
4,404,351	+				-0.1
4,404,352	-				-0.2
4,404,352	-				+1.1
4,404,352	-				-0.7
4,404,352	-				-2.9
4,404,352	-				+0.5
4,404,355	-				+0.2
4,404,610	+				+0.3
4,404,611	-				-0.5
4,404,611	-				+1.0
4,404,861	+				+0.9
4,404,862	-				-0.5
4,404,862	-				+0.9
4,404,862	-				+0.1
4,404,865	+				+1.2
4,404,877	-				+0.2
4,404,916	-		PS417_20285	0.12	-1.3
4,404,920	+		PS417_20285	0.13	-2.2
4,404,921	-		PS417_20285	0.13	+0.6
4,404,921	-		PS417_20285	0.13	-0.2
4,404,997	+		PS417_20285	0.19	-1.4
4,405,052	-		PS417_20285	0.23	-0.1
4,405,090	-		PS417_20285	0.26	-1.5
4,405,118	+		PS417_20285	0.28	+0.5
4,405,118	+		PS417_20285	0.28	-0.5
4,405,118	+		PS417_20285	0.28	+0.0
4,405,118	+		PS417_20285	0.28	+0.1
4,405,118	+		PS417_20285	0.28	-0.5
4,405,119	-		PS417_20285	0.28	-1.9
4,405,121	+		PS417_20285	0.29	-0.5
4,405,122	-		PS417_20285	0.29	-0.5
4,405,188	+		PS417_20285	0.34	+0.2
4,405,242	+		PS417_20285	0.38	-0.1
4,405,295	+		PS417_20285	0.42	+0.1
4,405,491	+		PS417_20285	0.58	-0.2
4,405,491	+		PS417_20285	0.58	-0.5
4,405,492	-		PS417_20285	0.58	-0.1
4,405,492	-		PS417_20285	0.58	-1.1
4,405,529	+		PS417_20285	0.61	+0.1
4,405,532	+		PS417_20285	0.61	-0.1
4,405,533	-		PS417_20285	0.61	-1.6
4,405,700	+		PS417_20285	0.75	-1.2
4,405,701	-		PS417_20285	0.75	-0.3
4,405,701	-		PS417_20285	0.75	-0.5
4,405,759	+		PS417_20285	0.79	-1.1
4,405,760	-		PS417_20285	0.79	+0.7
4,405,760	-		PS417_20285	0.79	-0.5
4,405,827	-		PS417_20285	0.85	-0.0
4,405,838	+		PS417_20285	0.86	-0.9
4,405,851	+		PS417_20285	0.87	-0.9
4,405,910	+				+1.9
4,405,933	+				-0.7
4,405,934	-				-0.5
4,406,027	+				-1.9
4,406,030	+				+0.5
4,406,031	-				-1.6
4,406,031	-				-0.3
4,406,068	+				+0.5
4,406,068	+				-0.3
4,406,068	+				+0.2
4,406,068	+				-0.4
4,406,069	-				-0.3
4,406,069	-				+1.9
4,406,069	-				-0.1
4,406,069	-				-0.7
4,406,174	+				-1.5
4,406,174	+				+0.6
4,406,175	-				+0.3
4,406,180	+				+0.0
4,406,208	-				+0.3
4,406,208	-				-0.2
4,406,215	+				+0.1
4,406,215	+				+0.3
4,406,247	+				-3.0
4,406,248	-				-1.1
4,406,376	-		PS417_20295	0.17	-0.7
4,406,376	-				+1.5
4,406,376	-		PS417_20295	0.17	-0.4
4,406,376	-				+3.9
4,406,376	-		PS417_20295	0.17	+0.3
4,406,376	-		PS417_20295	0.17	+1.5
4,406,390	+		PS417_20295	0.18	+0.4
4,406,390	+		PS417_20295	0.18	+0.1
4,406,390	+		PS417_20295	0.18	+0.3
4,406,391	-				+0.5
4,406,391	-		PS417_20295	0.18	+1.0
4,406,391	-		PS417_20295	0.18	-1.1
4,406,428	+		PS417_20295	0.21	-0.1
4,406,428	+		PS417_20295	0.21	-0.4
4,406,429	-		PS417_20295	0.21	+0.5
4,406,429	-		PS417_20295	0.21	-0.2
4,406,473	-		PS417_20295	0.25	+0.2
4,406,494	+		PS417_20295	0.27	+0.8
4,406,494	+				+3.1
4,406,537	+		PS417_20295	0.30	-0.9
4,406,543	+		PS417_20295	0.31	+0.6
4,406,543	+		PS417_20295	0.31	+1.1
4,406,543	+		PS417_20295	0.31	+0.3
4,406,543	+		PS417_20295	0.31	-0.4
4,406,544	-		PS417_20295	0.31	-0.1
4,406,728	+		PS417_20295	0.47	-1.2
4,406,728	+		PS417_20295	0.47	-0.4
4,406,729	-		PS417_20295	0.47	-0.1
4,406,803	+		PS417_20295	0.53	-0.3
4,406,815	-		PS417_20295	0.54	+0.7
4,406,815	-		PS417_20295	0.54	-1.3
4,406,889	-		PS417_20295	0.60	+0.5
4,406,912	+		PS417_20295	0.62	+1.5