Strain Fitness in Pseudomonas simiae WCS417 around PS417_19635

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,268,934	-		PS417_19625	0.76	-5.6
4,268,996	+		PS417_19625	0.83	-0.5
4,268,997	-		PS417_19625	0.84	-2.2
4,269,153	+				-6.5
4,269,154	-				-1.5
4,269,222	-				+1.5
4,269,222	-		PS417_19630	0.12	-2.0
4,269,258	+		PS417_19630	0.18	-3.0
4,269,592	+		PS417_19630	0.68	+0.5
4,269,639	+		PS417_19630	0.76	-2.8
4,269,640	-		PS417_19630	0.76	-2.3
4,269,759	+				-2.0
4,269,760	-				-3.0
4,269,760	-				-4.2
4,269,894	+		PS417_19635	0.15	-2.7
4,269,895	-		PS417_19635	0.15	+0.2
4,269,895	-		PS417_19635	0.15	-2.0
4,269,895	-		PS417_19635	0.15	-1.5
4,270,064	+		PS417_19635	0.33	-1.8
4,270,064	+		PS417_19635	0.33	-2.7
4,270,065	-		PS417_19635	0.33	-3.1
4,270,065	-		PS417_19635	0.33	-1.8
4,270,065	-		PS417_19635	0.33	+0.2
4,270,065	-		PS417_19635	0.33	-0.8
4,270,065	-		PS417_19635	0.33	-2.5
4,270,065	-		PS417_19635	0.33	-1.2
4,270,170	-		PS417_19635	0.45	-1.4
4,270,170	-		PS417_19635	0.45	-1.8
4,270,243	+		PS417_19635	0.53	-2.9
4,270,243	+		PS417_19635	0.53	-1.7
4,270,243	+		PS417_19635	0.53	-2.3
4,270,244	-		PS417_19635	0.53	-1.8
4,270,510	-		PS417_19635	0.82	-0.9
4,270,619	+				-0.5
4,270,619	+				-2.1
4,270,619	+				-2.2
4,270,619	+				-1.8
4,270,620	-				-3.3
4,270,620	-				-0.8
4,270,688	-				-0.1
4,270,775	+				-0.8
4,270,775	+				+0.0
4,270,775	+				-1.5
4,270,805	+				-1.5
4,270,806	-				-1.7
4,270,851	+				-3.2
4,270,924	+				-2.4
4,270,925	-				-1.3
4,270,928	+				-0.4
4,270,929	-				+0.7
4,270,929	-				-1.5
4,270,929	-				-2.1
4,270,935	+				-3.2
4,270,937	+				-1.7
4,270,937	+				-0.9
4,270,937	+				-1.3
4,270,938	-				-1.5
4,270,946	+				-0.7
4,270,947	-				-0.6
4,270,997	+				+1.0
4,270,998	-				-1.5
4,271,107	-				+0.7
4,271,227	-				-0.5
4,271,234	-				-1.8
4,271,234	-				+0.2
4,271,237	+				-1.3
4,271,237	+				-1.7
4,271,237	+				-0.7
4,271,253	-				-0.7
4,271,566	+		PS417_19645	0.82	-0.4
4,271,566	+		PS417_19645	0.82	+0.4
4,271,566	+		PS417_19645	0.82	-0.5