Strain Fitness in Pseudomonas simiae WCS417 around PS417_19375

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,198,152	+		PS417_19370	0.38	+0.1
4,198,289	-		PS417_19370	0.48	+0.5
4,198,550	-		PS417_19370	0.69	-0.1
4,198,569	+		PS417_19370	0.70	+0.3
4,198,570	-		PS417_19370	0.70	+0.5
4,198,673	-		PS417_19370	0.78	-1.0
4,198,930	+				-0.1
4,198,994	+				+0.6
4,199,047	+				-0.2
4,199,048	-				+2.4
4,199,401	-		PS417_19375	0.37	-1.8
4,199,401	-		PS417_19375	0.37	-0.3
4,199,738	+		PS417_19375	0.75	-0.1
4,199,738	+		PS417_19375	0.75	-1.5
4,199,738	+		PS417_19375	0.75	-0.2
4,199,738	+		PS417_19375	0.75	-1.4
4,199,738	+		PS417_19375	0.75	-0.3
4,199,739	-		PS417_19375	0.75	-3.7
4,199,739	-		PS417_19375	0.75	-0.5
4,199,739	-		PS417_19375	0.75	+0.5
4,199,739	-		PS417_19375	0.75	-1.2
4,199,739	-		PS417_19375	0.75	-0.2
4,199,960	+				-2.6
4,199,961	-				-0.6
4,200,086	+				+0.4
4,200,087	-				-0.5
4,200,087	-				-0.2
4,200,087	-				-0.5
4,200,087	-				+0.4
4,200,176	+		PS417_19380	0.18	+2.6
4,200,177	-				+1.5
4,200,182	+		PS417_19380	0.19	+1.6
4,200,182	+		PS417_19380	0.19	+0.2
4,200,182	+		PS417_19380	0.19	-0.1
4,200,182	+		PS417_19380	0.19	+1.4
4,200,183	-		PS417_19380	0.19	+0.4
4,200,183	-		PS417_19380	0.19	+0.9
4,200,183	-		PS417_19380	0.19	-0.7
4,200,183	-		PS417_19380	0.19	-2.7
4,200,183	-		PS417_19380	0.19	+0.4
4,200,183	-		PS417_19380	0.19	-1.1
4,200,183	-		PS417_19380	0.19	-1.2
4,200,183	-		PS417_19380	0.19	-0.2
4,200,183	-		PS417_19380	0.19	-0.8
4,200,183	-		PS417_19380	0.19	-1.8
4,200,183	-		PS417_19380	0.19	-0.1
4,200,224	+		PS417_19380	0.26	-0.4
4,200,225	-		PS417_19380	0.26	-1.2
4,200,294	-		PS417_19380	0.38	-0.2
4,200,294	-		PS417_19380	0.38	-2.7
4,200,294	-				-0.5
4,200,356	+		PS417_19380	0.48	-0.3
4,200,357	-		PS417_19380	0.48	+0.1
4,200,357	-		PS417_19380	0.48	+0.0
4,200,357	-		PS417_19380	0.48	+1.1
4,200,371	+		PS417_19380	0.50	+0.1
4,200,629	+				+0.4
4,200,630	-				-2.6
4,200,647	+				+0.5
4,200,657	-				-0.8
4,200,657	-				-0.4
4,200,665	+				+1.5
4,200,665	+				-1.3
4,200,666	-				+0.7
4,200,908	+		PS417_19385	0.20	-1.0
4,200,909	-		PS417_19385	0.20	+0.0