Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19015 and PS417_19020 are separated by 123 nucleotides PS417_19020 and PS417_19025 overlap by 4 nucleotides PS417_19025 and PS417_19030 are separated by 95 nucleotides
PS417_19015: PS417_19015 - LysR family transcriptional regulator, at 4,115,164 to 4,116,060
_19015
PS417_19020: PS417_19020 - dimethylmenaquinone methyltransferase, at 4,116,184 to 4,116,849
_19020
PS417_19025: PS417_19025 - aspartate aminotransferase, at 4,116,846 to 4,118,051
_19025
PS417_19030: PS417_19030 - sodium:dicarboxylate symporter, at 4,118,147 to 4,119,424
_19030
Position (kb) 4116
4117
4118
4119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4116.069 kb on + strand at 4116.135 kb on - strand at 4116.135 kb on - strand at 4116.394 kb on + strand, within PS417_19020 at 4116.428 kb on + strand, within PS417_19020 at 4116.429 kb on - strand, within PS417_19020 at 4116.429 kb on - strand at 4116.601 kb on + strand, within PS417_19020 at 4116.728 kb on + strand, within PS417_19020 at 4117.038 kb on + strand, within PS417_19025 at 4117.038 kb on + strand, within PS417_19025 at 4117.114 kb on - strand at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.161 kb on + strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.162 kb on - strand, within PS417_19025 at 4117.390 kb on - strand at 4117.426 kb on + strand, within PS417_19025 at 4117.427 kb on - strand, within PS417_19025 at 4117.467 kb on + strand at 4117.569 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.655 kb on + strand, within PS417_19025 at 4117.701 kb on - strand, within PS417_19025 at 4117.741 kb on - strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.821 kb on + strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.822 kb on - strand, within PS417_19025 at 4117.905 kb on + strand, within PS417_19025 at 4118.103 kb on - strand at 4118.147 kb on - strand at 4118.285 kb on - strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.843 kb on + strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.844 kb on - strand, within PS417_19030 at 4118.866 kb on - strand at 4119.011 kb on + strand, within PS417_19030 at 4119.012 kb on - strand, within PS417_19030
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 4,116,069 + +0.5 4,116,135 - -3.3 4,116,135 - -1.0 4,116,394 + PS417_19020 0.32 +0.6 4,116,428 + PS417_19020 0.37 +0.0 4,116,429 - PS417_19020 0.37 -0.5 4,116,429 - +0.5 4,116,601 + PS417_19020 0.63 +4.4 4,116,728 + PS417_19020 0.82 +1.2 4,117,038 + PS417_19025 0.16 -0.6 4,117,038 + PS417_19025 0.16 -2.4 4,117,114 - -0.8 4,117,161 + PS417_19025 0.26 -1.0 4,117,161 + PS417_19025 0.26 +0.3 4,117,161 + PS417_19025 0.26 -2.5 4,117,162 - PS417_19025 0.26 -1.3 4,117,162 - PS417_19025 0.26 +0.7 4,117,162 - PS417_19025 0.26 -0.4 4,117,162 - PS417_19025 0.26 -0.3 4,117,162 - PS417_19025 0.26 +1.1 4,117,390 - -1.3 4,117,426 + PS417_19025 0.48 +1.1 4,117,427 - PS417_19025 0.48 -0.3 4,117,467 + -0.8 4,117,569 + PS417_19025 0.60 +0.2 4,117,655 + PS417_19025 0.67 +1.6 4,117,655 + PS417_19025 0.67 +0.4 4,117,701 - PS417_19025 0.71 +0.4 4,117,741 - PS417_19025 0.74 +0.6 4,117,821 + PS417_19025 0.81 -0.8 4,117,821 + PS417_19025 0.81 -0.3 4,117,822 - PS417_19025 0.81 +1.3 4,117,822 - PS417_19025 0.81 +0.7 4,117,822 - PS417_19025 0.81 +0.0 4,117,822 - PS417_19025 0.81 +0.8 4,117,905 + PS417_19025 0.88 -0.2 4,118,103 - -0.6 4,118,147 - -0.4 4,118,285 - PS417_19030 0.11 +0.0 4,118,843 + PS417_19030 0.54 -3.3 4,118,843 + PS417_19030 0.54 +0.5 4,118,844 - PS417_19030 0.55 +0.8 4,118,844 - PS417_19030 0.55 -3.6 4,118,866 - +1.5 4,119,011 + PS417_19030 0.68 +0.1 4,119,012 - PS417_19030 0.68 +2.1
Or see this region's nucleotide sequence