Strain Fitness in Pseudomonas simiae WCS417 around PS417_18295

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,987,586	+		PS417_18290	0.35	-0.1
3,987,587	-		PS417_18290	0.35	-0.8
3,987,587	-		PS417_18290	0.35	-0.1
3,987,587	-		PS417_18290	0.35	-0.2
3,987,712	+				+1.5
3,987,822	-		PS417_18290	0.55	+0.1
3,987,822	-		PS417_18290	0.55	+0.2
3,988,069	+		PS417_18290	0.76	+0.3
3,988,069	+		PS417_18290	0.76	-0.8
3,988,069	+		PS417_18290	0.76	-0.1
3,988,216	-		PS417_18290	0.88	+0.5
3,988,216	-		PS417_18290	0.88	+0.1
3,988,331	-				+0.3
3,988,331	-				-0.0
3,988,356	-				+0.6
3,988,465	+				-0.3
3,988,466	-				-0.5
3,988,480	-				+1.3
3,988,511	+				-0.8
3,988,512	-				+1.1
3,988,836	+		PS417_18295	0.24	-0.1
3,988,836	+		PS417_18295	0.24	+0.1
3,988,838	+		PS417_18295	0.24	-0.1
3,988,886	-		PS417_18295	0.28	+2.9
3,988,981	-		PS417_18295	0.35	-0.4
3,989,306	-		PS417_18295	0.58	+1.0
3,989,382	+		PS417_18295	0.64	+0.1
3,989,382	+		PS417_18295	0.64	+0.1
3,989,383	-		PS417_18295	0.64	+1.3
3,989,383	-		PS417_18295	0.64	-0.9
3,989,602	-		PS417_18295	0.80	+0.4
3,989,620	+		PS417_18295	0.81	+0.5
3,989,621	-		PS417_18295	0.81	+0.0
3,989,623	+				+0.5
3,989,623	+		PS417_18295	0.81	+0.1
3,989,623	+		PS417_18295	0.81	+0.9
3,989,623	+		PS417_18295	0.81	+0.5
3,989,623	+		PS417_18295	0.81	-0.1
3,989,623	+		PS417_18295	0.81	-0.3
3,989,623	+		PS417_18295	0.81	+0.8
3,989,623	+		PS417_18295	0.81	+0.1
3,989,624	-		PS417_18295	0.81	-1.5
3,989,624	-		PS417_18295	0.81	-0.2
3,989,624	-		PS417_18295	0.81	+0.2
3,989,627	+		PS417_18295	0.81	+0.1
3,989,628	-		PS417_18295	0.81	+2.0
3,989,656	+		PS417_18295	0.83	-0.2
3,989,656	+		PS417_18295	0.83	+0.1
3,989,656	+		PS417_18295	0.83	-0.2
3,989,657	-		PS417_18295	0.83	-2.1
3,989,657	-		PS417_18295	0.83	+0.2
3,989,657	-		PS417_18295	0.83	-0.3
3,989,657	-		PS417_18295	0.83	+0.2
3,989,727	+		PS417_18295	0.89	+0.5
3,989,879	+				-1.5
3,989,955	+				-0.1
3,990,189	+		PS417_18300	0.44	+0.2
3,990,189	+		PS417_18300	0.44	+0.4
3,990,190	-		PS417_18300	0.44	+0.0
3,990,221	-		PS417_18300	0.49	+0.3
3,990,426	+		PS417_18300	0.79	-0.1
3,990,460	+		PS417_18300	0.83	-0.3
3,990,534	+				+0.6