Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01750 and PS417_01755 are separated by 161 nucleotides PS417_01755 and PS417_01760 are separated by 15 nucleotides
PS417_01750: PS417_01750 - histidine ammonia-lyase, at 388,485 to 390,017
_01750
PS417_01755: PS417_01755 - proline-specific permease, at 390,179 to 391,588
_01755
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 389.204 kb on + strand, within PS417_01750 at 389.393 kb on - strand at 389.910 kb on + strand at 390.058 kb on + strand at 390.059 kb on - strand at 390.062 kb on + strand at 390.062 kb on + strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.063 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.092 kb on - strand at 390.168 kb on - strand at 390.168 kb on - strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.226 kb on + strand at 390.227 kb on - strand at 390.227 kb on - strand at 390.272 kb on + strand at 390.273 kb on - strand at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.425 kb on + strand, within PS417_01755 at 390.464 kb on + strand, within PS417_01755 at 390.514 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.518 kb on + strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.519 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.927 kb on - strand, within PS417_01755 at 390.955 kb on + strand, within PS417_01755 at 390.956 kb on - strand, within PS417_01755 at 390.960 kb on - strand, within PS417_01755 at 391.115 kb on + strand, within PS417_01755 at 391.116 kb on - strand, within PS417_01755 at 391.656 kb on - strand at 391.732 kb on + strand, within PS417_01760 at 391.733 kb on - strand at 391.733 kb on - strand, within PS417_01760 at 391.866 kb on - strand, within PS417_01760 at 391.998 kb on + strand at 392.098 kb on + strand, within PS417_01760 at 392.098 kb on + strand, within PS417_01760 at 392.153 kb on + strand, within PS417_01760 at 392.460 kb on - strand, within PS417_01760
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 389,204 + PS417_01750 0.47 -0.5 389,393 - +1.7 389,910 + +0.7 390,058 + -0.7 390,059 - -0.7 390,062 + -1.6 390,062 + -0.4 390,063 - -0.8 390,063 - -1.1 390,063 - +0.5 390,063 - +0.3 390,092 - +0.1 390,092 - +1.9 390,092 - -2.2 390,168 - -0.9 390,168 - -0.1 390,226 + +0.3 390,226 + -2.2 390,226 + -0.0 390,227 - +0.3 390,227 - -1.1 390,272 + +0.6 390,273 - -0.9 390,425 + PS417_01755 0.17 +0.1 390,425 + PS417_01755 0.17 +1.1 390,425 + PS417_01755 0.17 +0.6 390,464 + PS417_01755 0.20 +0.0 390,514 + PS417_01755 0.24 +1.2 390,518 + PS417_01755 0.24 +2.0 390,518 + PS417_01755 0.24 +1.0 390,519 - PS417_01755 0.24 -1.1 390,519 - PS417_01755 0.24 -1.9 390,519 - PS417_01755 0.24 +2.0 390,519 - PS417_01755 0.24 +0.5 390,927 - PS417_01755 0.53 +0.5 390,927 - PS417_01755 0.53 +0.2 390,927 - PS417_01755 0.53 +0.8 390,955 + PS417_01755 0.55 +0.1 390,956 - PS417_01755 0.55 +1.0 390,960 - PS417_01755 0.55 +1.0 391,115 + PS417_01755 0.66 +0.1 391,116 - PS417_01755 0.66 -0.4 391,656 - +0.1 391,732 + PS417_01760 0.11 +0.7 391,733 - -0.5 391,733 - PS417_01760 0.11 -0.9 391,866 - PS417_01760 0.22 +0.4 391,998 + +1.7 392,098 + PS417_01760 0.41 -0.1 392,098 + PS417_01760 0.41 +1.5 392,153 + PS417_01760 0.46 -0.4 392,460 - PS417_01760 0.71 +1.0
Or see this region's nucleotide sequence