Strain Fitness in Pseudomonas simiae WCS417 around PS417_17070

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,728,527	-				+1.5
3,728,608	+		PS417_17065	0.44	+0.8
3,728,609	-		PS417_17065	0.44	+0.2
3,728,746	+		PS417_17065	0.57	+0.8
3,728,853	+		PS417_17065	0.67	+0.5
3,728,873	-		PS417_17065	0.69	+0.2
3,728,947	+		PS417_17065	0.75	-0.2
3,729,208	-				-0.4
3,729,208	-				+0.5
3,729,208	-				-0.0
3,729,250	+				+0.5
3,729,250	+				-0.2
3,729,250	+				+1.3
3,729,250	+				+0.2
3,729,250	+				-1.6
3,729,251	-				+4.0
3,729,251	-				+0.5
3,729,265	-				-1.1
3,729,265	-				-0.1
3,729,287	-				-0.9
3,729,306	-				+0.8
3,729,361	-				+3.5
3,729,403	-				+1.6
3,729,661	+		PS417_17070	0.55	-1.3
3,729,663	-		PS417_17070	0.56	+1.2
3,729,755	+		PS417_17070	0.74	-1.5
3,729,755	+		PS417_17070	0.74	-2.5
3,729,755	+		PS417_17070	0.74	+1.5
3,730,564	-				+0.8
3,730,568	-				-0.2
3,730,651	+				-0.3
3,730,685	-				-0.7
3,730,698	-				+0.6
3,730,699	+				+1.9
3,730,699	+				-1.3
3,730,700	-				-0.3
3,730,700	-				-0.2
3,730,823	-		PS417_17080	0.21	-1.3