Strain Fitness in Pseudomonas simiae WCS417 around PS417_16985

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,709,076	-		PS417_16980	0.17	+0.0
3,709,076	-		PS417_16980	0.17	-0.4
3,709,101	+		PS417_16980	0.20	+0.3
3,709,102	-		PS417_16980	0.20	-0.0
3,709,102	-		PS417_16980	0.20	-0.1
3,709,102	-		PS417_16980	0.20	-1.4
3,709,209	-		PS417_16980	0.34	-0.3
3,709,209	-				+2.1
3,709,323	+		PS417_16980	0.48	-0.4
3,709,867	-				-0.1
3,709,875	+				-0.5
3,709,876	-				-0.6
3,709,876	-				-0.8
3,709,898	-				+0.3
3,709,979	+				+0.1
3,710,507	+		PS417_16985	0.43	+1.0
3,710,507	+		PS417_16985	0.43	+2.5
3,710,508	-		PS417_16985	0.43	+1.5
3,710,508	-		PS417_16985	0.43	-0.2
3,710,633	-		PS417_16985	0.52	+0.5
3,710,646	-		PS417_16985	0.53	+0.5
3,711,023	+		PS417_16985	0.82	-0.2
3,711,166	-				-2.3
3,711,346	-				+3.3
3,711,356	+				-0.8
3,711,357	-				-1.0
3,711,357	-				-0.4
3,711,357	-				+0.6
3,711,357	-				-0.2
3,711,400	+				-1.1
3,711,401	-				+0.9
3,711,433	+				-0.1
3,711,433	+				-1.3
3,711,433	+				-1.1
3,711,433	+				-1.0
3,711,433	+				+3.5
3,711,433	+				-0.4
3,711,434	-				+0.5
3,711,434	-				-0.7
3,711,434	-				+1.2
3,711,434	-				+1.5
3,711,434	-				-0.0
3,711,434	-				+1.0
3,711,434	-				-0.8
3,711,517	+				+0.6
3,711,517	+				+1.5
3,711,517	+				-1.7
3,711,523	+		PS417_16990	0.10	-0.6
3,711,524	-		PS417_16990	0.10	+0.2
3,711,524	-		PS417_16990	0.10	-0.7
3,711,670	+		PS417_16990	0.22	-1.8
3,711,702	-		PS417_16990	0.25	+0.5
3,711,839	+		PS417_16990	0.36	+1.2
3,711,840	-		PS417_16990	0.36	+0.3