Strain Fitness in Pseudomonas simiae WCS417 around PS417_16270

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,564,979	-		PS417_16260	0.89	+1.2
3,565,001	+		PS417_16260	0.90	-1.6
3,565,001	+		PS417_16260	0.90	-0.2
3,565,053	+				+0.4
3,565,053	+				+0.2
3,565,054	-				+1.4
3,565,285	+				-0.3
3,565,286	-				-0.5
3,565,286	-				+0.6
3,565,286	-				-0.2
3,565,481	+		PS417_16265	0.26	+0.0
3,565,597	-		PS417_16265	0.69	-0.2
3,565,627	-		PS417_16265	0.80	-0.1
3,565,640	-		PS417_16265	0.85	+0.1
3,565,654	-				-2.3
3,565,684	-				+2.4
3,565,695	-				+0.9
3,565,695	-				-1.4
3,565,715	+				+0.3
3,565,715	+				+1.9
3,565,716	-				-1.2
3,565,757	-				-0.6
3,565,790	+				+0.6
3,565,791	-				-0.1
3,565,796	+				+0.1
3,565,797	-				-1.0
3,565,797	-				-0.3
3,565,816	+				+1.4
3,565,817	-				-1.4
3,565,858	+				-1.7
3,565,859	-				-0.7
3,565,859	-				-0.0
3,565,859	-				+0.4
3,565,859	-				+1.7
3,566,095	+		PS417_16270	0.37	-2.5
3,566,096	-				-0.2
3,566,146	+		PS417_16270	0.44	-0.6
3,566,147	-		PS417_16270	0.44	-1.8
3,566,194	+		PS417_16270	0.51	+0.2
3,566,195	-		PS417_16270	0.51	-0.0
3,566,332	+		PS417_16270	0.69	-1.3
3,566,350	-		PS417_16270	0.71	-0.9
3,566,353	+		PS417_16270	0.72	-0.9
3,566,497	-				+0.9
3,566,622	-				+0.2
3,566,718	+				-0.5
3,566,730	-				+1.1
3,566,731	+				-0.2
3,566,731	+				+0.2
3,566,731	+				+0.2
3,566,731	+				+0.1
3,566,731	+				-2.2
3,566,735	+				-0.4
3,566,735	+				+0.3
3,566,736	-				-0.2
3,566,750	-				+1.8
3,566,750	-				-0.2
3,566,750	-				+1.0
3,566,750	-				+1.4
3,566,861	+				-0.6
3,566,890	+				-1.7
3,566,909	+				+0.2
3,567,099	+		PS417_16275	0.47	-0.3
3,567,100	-		PS417_16275	0.47	+0.8
3,567,128	+		PS417_16275	0.56	+0.1
3,567,240	-				+0.9
3,567,306	+				+0.4
3,567,307	-				+0.2
3,567,307	-				-0.2
3,567,307	-				-0.9
3,567,323	+				+1.1
3,567,388	+				-1.3
3,567,388	+				+0.6
3,567,388	+				+0.4
3,567,495	+				+1.4
3,567,495	+				-2.0
3,567,495	+				-1.2
3,567,496	-				+0.7