Strain Fitness in Pseudomonas simiae WCS417 around PS417_15205

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,333,132	+		PS417_15200	0.21	+1.8
3,333,132	+		PS417_15200	0.21	+1.4
3,333,145	+				-1.6
3,333,146	-		PS417_15200	0.24	+1.2
3,333,198	+				-0.1
3,333,460	+		PS417_15200	0.87	+1.3
3,333,566	+				-0.6
3,333,643	+				-0.1
3,333,678	+				-0.1
3,333,714	+				+0.4
3,333,721	-				+2.0
3,333,826	+				-0.1
3,333,826	+				-0.9
3,333,830	+				+0.4
3,333,831	-				-0.1
3,333,831	-				+2.5
3,333,947	-				-0.4
3,333,947	-				+1.0
3,334,133	+		PS417_15205	0.14	+0.2
3,334,133	+		PS417_15205	0.14	-0.1
3,334,134	-		PS417_15205	0.14	-0.6
3,334,178	+		PS417_15205	0.17	-1.0
3,334,252	+		PS417_15205	0.22	-0.1
3,334,252	+		PS417_15205	0.22	+1.1
3,334,270	+		PS417_15205	0.23	+0.8
3,334,271	-		PS417_15205	0.23	+0.2
3,334,276	+		PS417_15205	0.23	+0.6
3,334,277	-		PS417_15205	0.23	+0.6
3,334,293	-		PS417_15205	0.25	+1.8
3,334,390	-		PS417_15205	0.31	+0.2
3,334,490	+		PS417_15205	0.38	-0.5
3,334,490	+		PS417_15205	0.38	-1.6
3,334,553	+		PS417_15205	0.42	+0.4
3,334,558	+		PS417_15205	0.43	+0.4
3,334,558	+				-0.6
3,334,594	+		PS417_15205	0.45	+0.3
3,334,610	+		PS417_15205	0.46	+0.0
3,334,611	-		PS417_15205	0.46	-0.6
3,334,661	+		PS417_15205	0.50	+1.1
3,334,919	+		PS417_15205	0.68	-1.4
3,335,039	+		PS417_15205	0.76	-0.9
3,335,040	-		PS417_15205	0.76	+1.6
3,335,113	+		PS417_15205	0.81	+0.8
3,335,114	-		PS417_15205	0.81	+0.7
3,335,135	-		PS417_15205	0.82	-1.6
3,335,135	-		PS417_15205	0.82	-0.7
3,335,166	-		PS417_15205	0.85	-0.9
3,335,215	+				+1.4
3,335,215	+		PS417_15205	0.88	+0.5
3,335,215	+		PS417_15205	0.88	-1.8
3,335,216	-		PS417_15205	0.88	-0.1
3,335,216	-		PS417_15205	0.88	-0.5
3,335,384	+				-2.4
3,335,384	+				-0.1
3,335,384	+				-0.4
3,335,385	-				+0.7
3,335,402	+				-0.2
3,335,402	+				+0.8
3,335,402	+				+1.9
3,335,403	-				+0.6
3,335,405	+				-1.1
3,335,405	+				+0.6
3,335,405	+				+0.4
3,335,405	+				-0.2
3,335,405	+				-0.1
3,335,406	-				-0.3
3,335,406	-				+1.0
3,335,406	-				-0.7
3,335,408	+				+0.6
3,335,408	+				-0.5
3,335,409	-				-0.7
3,335,566	+				-1.3
3,335,567	-				+1.1
3,335,940	-		PS417_15210	0.85	-0.1
3,336,183	+				+0.1
3,336,261	+		PS417_15215	0.23	-2.4