Strain Fitness in Pseudomonas simiae WCS417 around PS417_01125

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01120 and PS417_01125 are separated by 179 nucleotidesPS417_01125 and PS417_01130 are separated by 108 nucleotides PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049 _01120 PS417_01125: PS417_01125 - cysteine desulfhydrase, at 247,229 to 248,557 _01125 PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703 _01130 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 246.244 kb on - strand, within PS417_01120at 246.262 kb on - strand, within PS417_01120at 246.353 kb on + strand, within PS417_01120at 246.353 kb on + strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.556 kb on - strand, within PS417_01120at 246.684 kb on + strand, within PS417_01120at 246.855 kb on + strandat 246.957 kb on + strandat 246.957 kb on + strandat 246.958 kb on - strandat 246.972 kb on + strandat 247.012 kb on - strandat 247.151 kb on + strandat 247.151 kb on + strandat 247.255 kb on + strandat 247.255 kb on + strandat 247.256 kb on - strandat 247.279 kb on + strandat 247.418 kb on + strand, within PS417_01125at 247.463 kb on + strand, within PS417_01125at 247.464 kb on - strand, within PS417_01125at 247.635 kb on - strand, within PS417_01125at 247.748 kb on - strand, within PS417_01125at 247.748 kb on - strand, within PS417_01125at 247.883 kb on + strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.902 kb on - strand, within PS417_01125at 247.902 kb on - strand, within PS417_01125at 247.904 kb on + strand, within PS417_01125at 248.103 kb on - strand, within PS417_01125at 248.103 kb on - strand, within PS417_01125at 248.297 kb on + strand, within PS417_01125at 248.298 kb on - strand, within PS417_01125at 248.352 kb on - strand, within PS417_01125at 248.528 kb on + strandat 248.528 kb on + strandat 248.528 kb on + strandat 248.529 kb on - strandat 248.529 kb on - strandat 248.529 kb on - strandat 248.537 kb on + strandat 248.537 kb on + strandat 248.537 kb on + strandat 248.538 kb on - strandat 248.538 kb on - strandat 248.538 kb on - strandat 248.620 kb on - strandat 248.626 kb on - strandat 248.638 kb on + strandat 248.639 kb on - strandat 248.672 kb on + strandat 248.672 kb on + strandat 248.672 kb on + strandat 248.673 kb on - strandat 248.673 kb on - strandat 248.673 kb on - strandat 248.673 kb on - strandat 248.673 kb on - strandat 248.702 kb on - strandat 248.861 kb on + strand, within PS417_01130at 248.862 kb on - strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.011 kb on + strand, within PS417_01130at 249.254 kb on + strand, within PS417_01130at 249.365 kb on + strand, within PS417_01130at 249.365 kb on + strand, within PS417_01130

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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246,244 - PS417_01120 0.60 +0.3
246,262 - PS417_01120 0.61 -0.9
246,353 + PS417_01120 0.65 -3.3
246,353 + PS417_01120 0.65 -0.1
246,354 - PS417_01120 0.65 +1.1
246,354 - PS417_01120 0.65 +0.9
246,354 - PS417_01120 0.65 +0.6
246,354 - PS417_01120 0.65 +0.9
246,354 - PS417_01120 0.65 -0.7
246,556 - PS417_01120 0.75 +0.1
246,684 + PS417_01120 0.82 -3.2
246,855 + -2.6
246,957 + -1.1
246,957 + -1.5
246,958 - +0.5
246,972 + -0.3
247,012 - +0.2
247,151 + +1.8
247,151 + -0.7
247,255 + +0.7
247,255 + -0.1
247,256 - +0.3
247,279 + -1.1
247,418 + PS417_01125 0.14 -0.8
247,463 + PS417_01125 0.18 +0.6
247,464 - PS417_01125 0.18 -2.2
247,635 - PS417_01125 0.31 -0.1
247,748 - PS417_01125 0.39 -0.8
247,748 - PS417_01125 0.39 +0.4
247,883 + PS417_01125 0.49 +0.7
247,884 - PS417_01125 0.49 +1.4
247,884 - PS417_01125 0.49 +0.2
247,884 - PS417_01125 0.49 +1.0
247,902 - PS417_01125 0.51 +1.3
247,902 - PS417_01125 0.51 +0.4
247,904 + PS417_01125 0.51 +0.5
248,103 - PS417_01125 0.66 -0.4
248,103 - PS417_01125 0.66 -1.1
248,297 + PS417_01125 0.80 -0.6
248,298 - PS417_01125 0.80 +2.9
248,352 - PS417_01125 0.84 -0.1
248,528 + +0.1
248,528 + +0.3
248,528 + -3.2
248,529 - +0.3
248,529 - +0.4
248,529 - -1.4
248,537 + +0.1
248,537 + -2.9
248,537 + +0.2
248,538 - +0.1
248,538 - -0.4
248,538 - +0.4
248,620 - -1.5
248,626 - +1.7
248,638 + -0.8
248,639 - +0.5
248,672 + -1.0
248,672 + -0.3
248,672 + +0.7
248,673 - +0.6
248,673 - -0.9
248,673 - -1.1
248,673 - +0.3
248,673 - +0.4
248,702 - -0.1
248,861 + PS417_01130 0.19 -1.1
248,862 - PS417_01130 0.19 +1.2
249,011 + PS417_01130 0.33 +0.4
249,011 + PS417_01130 0.33 +0.6
249,011 + PS417_01130 0.33 +0.4
249,254 + PS417_01130 0.57 -0.8
249,365 + PS417_01130 0.67 +3.3
249,365 + PS417_01130 0.67 -1.1

Or see this region's nucleotide sequence